Brassica napus (rape): 106426380
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Entry
106426380 CDS
T04128
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106426380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106426380
03012 Translation factors [BR:
bna03012
]
106426380
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106426380
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106426380
Translation factors [BR:
bna03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
106426380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
R3H
HA2_C
HA2_N
AAA_22
Ank_5
Ank_2
nSTAND3
AAA_19
NPHP3_N
ATPase
AAA_7
T2SSE
Sigma54_activat
AAA_11
Ank_4
AAA_16
Motif
Other DBs
NCBI-GeneID:
106426380
NCBI-ProteinID:
XP_013722550
UniProt:
A0A816K4U6
LinkDB
All DBs
Position
C4:complement(54383264..54389193)
Genome browser
AA seq
1310 aa
AA seq
DB search
MGNKRFRSENAAGKPSSVEATRIWASKVIEDFRASGNEVYTFGHNLSNTERGVIHQMCRK
MGIQSKSSGQGNQRRLSIFKDMYRNGKNKGAKEKSRNREKLRCVSFPPEADAILQELFTY
YPPCDGDTAATSFNKYVGNSCKQGQWKDDFFRKPLMSGDEILDKVASLSSRLRSDRALQE
ISKLRSRLPITSFRDAITSAVESNQVILISGETGCGKTTQVPQYLLDHMWASKRETCKIV
CTQPRRISAMSVSERISCERGESIGDNIGYKVRLQSKGGRHSSVVFCTNGILLRVLVGKG
SGSYVSDITHIIVDEIHERDCYSDFMLAIIRDLLPSNPHLRLILMSATLDAERFSGYFGG
CPVVRVPGFTYPVRTLYLEDVLSILKSGGDNHLSSANLSTPDQKFYLTDEDKLALDEAII
LAWTNDEFDALLDLVSSRGSPEIYNYQHQSTLLSPLMVFAGKGRISDVCMLLSFGADCNL
KSKDGMTALEMAETENQLEAAQIIREHAESSQSNSQQAQQILDKYMATINPEQVDVSLIQ
QLMRKICGDSEDGGAILVFLPGWDDINKTRQRLLDSPFFSDGSKFNIICLHSMVPAGEQK
KVFSRPPRGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYSNVSTLQSSWVSKA
NAKQREGRAGRCQPGICYHLYSRLRAASMPDFKVPEIKRMPVEELCLQVKILDPNCKTND
FLQKLLDPPVDQSIANALSILQDIGALTPEEELTELGEKFGHLPVHPLISKMLFFAVLVN
CLDPALTLACAADYKEPFTMPMSPVERQKAATAKLELASLCGGDSDHLAVVAAFDCWKNA
KERGLAAEFCSQYFVSPSAMKMLDQMRSQLESELKRHGIIPYDISSCSQNSRDPGILRAV
LAVGLYPMVGRLCPSFGNNRRSLVETVSGAKVRVHSLSNNFNLSSRKYDESLVVFDEITR
GDGGMHIRNCTVARDLPLLLVSTEIAVAPTVSSEADDSDDEEEEDDEETGEEEEEGDNSN
EEGMNIHKAESRREQNMMSSPENSVKLVVDRWLPYRTTALEVAQMYILRERLTASILFKV
RHPRENLPPHLGASMYAIARILSYDGHAGLSSPSESMRPKHSRAEMYETGGWEEKPNSFL
NSLFWSLSLRENKPSSSGHVNRNPQHGFNTVQTEVASMHTQQNIKQRNPKAANNGDSGKK
KEKMYVNHTNGIHQPEAASIAKQSKHKSANSLSLGNKKENMPSDQVYGNQQPNSAPREAA
SPVAKHQISKKTKNRPANNSDFGKKKTQYVPKIDLHKKEREGKVEQKGNA
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atggggaacaagaggttcaggtctgaaaatgcagcaggcaagccaagttccgtcgaagct
actaggatctgggcttctaaggtcatcgaagactttcgtgcctccggtaacgaagtttac
acgtttgggcataatctctcaaacaccgaacgtggcgtgattcaccagatgtgtcggaaa
atgggtattcaatccaaaagctctgggcaagggaatcaaaggcgtctttcgatattcaaa
gacatgtacagaaatgggaagaacaaaggagctaaggagaagtcaagaaacagagagaag
cttcggtgcgtctcgtttccgcctgaggctgatgctattctccaggagttgtttacttat
tatccaccctgtgacggagatactgctgctacgtcgttcaacaagtacgtaggcaactct
tgtaaacaagggcagtggaaagatgatttttttaggaagccgctgatgagcggtgatgag
atcttggacaaggtggcgtctttgagttctaggctgaggagtgatagagctctccaggag
atctctaagttgcggtcaaggcttcccatcacatcgtttagagatgctataacatctgca
gtggaatccaatcaggttattcttatttctggtgaaactggttgcgggaaaactactcag
gtgcctcaatatcttttagaccatatgtgggcaagcaaaagagaaacttgcaaaattgta
tgcacccaaccacggcgtatctccgcaatgtcagtttctgaaagaatatcctgtgaaaga
ggtgaaagcattggagacaacattggttacaaggttcgactgcagagcaaaggtggaagg
cactcatcagttgttttctgcaccaatggcattctcctgagagtgcttgtaggaaaaggc
tctggtagctatgtttccgacataactcacatcattgtggatgaaatccatgaaagggat
tgctactctgatttcatgttggcaattataagggacttgcttccatcaaatcctcatctc
cgtctgatcttaatgagtgctacgcttgatgctgagagattctcgggatattttggaggt
tgcccggttgtccgtgtccctggattcacttatccagtgagaactttatatttggaggat
gtgctttctattctgaagtcaggtggagataatcatctaagctctgccaacttgagtaca
ccagaccagaagttttatttaacagatgaagataaacttgctttagatgaagcaatcatc
ttggcttggacaaatgatgagttcgatgccctcttagatctagtttcttctcggggaagt
cctgagatctacaattatcagcaccaatcaaccttgctatcaccacttatggtatttgct
ggaaaaggaaggatcagcgatgtatgcatgctcctctcattcggcgcagactgtaactta
aagtccaaagatggtatgacagcgttagaaatggccgaaacagagaaccagctagaagct
gctcaaatcatcagggagcatgcagaaagctctcagtctaattctcagcaagcacaacag
atactcgataagtacatggcgacaatcaacccggagcaggtcgatgtgagtcttatacag
cagctaatgaggaaaatatgtggcgactcagaagatggtggtgccattcttgtgtttcta
cctggatgggatgatataaataaaacaagacagagattacttgacagcccttttttctcg
gatggtagtaaattcaacattatatgtcttcactcaatggttccagcaggggagcagaag
aaagttttcagtcgccctcctcgaggttgtcgcaagattgtgctcgctacgaatattgct
gagtcagcagtgaccattgatgatgtggtttatgtgatagatagtggccggatgaaggaa
aagagctatgatccttacagtaatgtttcaactcttcaatcttcctgggtatcgaaagca
aatgccaaacagcgtgagggtcgcgcaggtcgttgccagcctggcatttgttatcatctt
tattctagacttcgtgcagcttctatgccagattttaaagttcctgagattaagaggatg
cctgtagaagaactctgcttacaggttaagatcctcgatccaaattgtaaaacaaatgat
tttctccagaaactgttggacccgcctgttgatcaaagtattgcaaacgccttgagcatc
ctacaagacatcggggccctgacacccgaggaagagctgacagaacttggagagaagttt
ggtcatctcccagttcatcctctgataagcaagatgcttttcttcgctgtattagtgaac
tgtctggatcctgcacttactctggcatgtgcagcagactacaaggaacctttcaccatg
cccatgtcgccagttgaaagacagaaagctgctactgcaaaacttgaacttgcgtcgctc
tgtggaggcgacagtgatcacctagcggttgttgctgcctttgactgctggaaaaacgca
aaagaaagaggtcttgcggctgagttttgctctcagtactttgtctccccaagtgctatg
aagatgttggatcaaatgcgtagccaacttgagtcagaacttaaaagacacgggattatt
ccttatgacatatcgagttgtagccagaactcgcgtgatccgggtatactccgtgctgtc
ctagctgtaggattgtatccaatggtggggagattgtgcccatcttttggtaataatcga
agatctttggtagagactgttagtggtgctaaagttcgtgtgcattcactctcaaacaac
ttcaacttgtcgtcgaggaagtatgatgaatccttagttgttttcgatgagatcacacgt
ggagatggaggcatgcacataagaaactgtaccgttgctcgcgatctccctttgttactg
gtctcaacagagatagctgtagctcctacagttagcagtgaagctgatgatagtgatgac
gaggaagaagaagatgatgaagaaacaggcgaagaagaagaagagggagataatagtaat
gaagaggggatgaatatacataaagcagagagtaggcgtgaacagaacatgatgtcttcg
cctgaaaattcagtcaagttagtagttgatcgttggctgccttacagaaccacagccctt
gaagttgctcaaatgtacattttgcgtgagcgactaactgcatccattttgtttaaggta
agacatccacgggaaaacttaccgcctcatcttggagcttctatgtatgcaatagctcgt
attctctcatatgatggtcatgcgggactttcatctccatcggagtctatgaggccaaaa
cattcgagggctgagatgtatgaaactggaggatgggaagaaaagccaaactctttcctc
aactcactcttttggtctctgagtctgagagagaacaagccttcttcttctggtcacgtg
aataggaatccacagcatggtttcaacacggttcaaacagaagttgcatcaatgcatacg
cagcaaaacatcaagcaaagaaaccccaaagcagctaacaatggtgattcgggtaagaaa
aaagagaaaatgtatgttaatcacaccaatgggattcaccagcctgaagctgcatctatt
gctaagcaatcaaagcacaaatcagccaacagtttgagtttaggtaacaagaaagagaac
atgccttcggatcaggtctatggtaatcagcaaccaaactcagctccaagagaagctgcc
tcaccggtggctaagcatcagatcagtaagaaaacaaagaacaggccagccaacaactcg
gattttggcaagaagaaaacacagtatgttccaaagatcgatctccataaaaaggaacgc
gaaggcaaagtagagcagaagggaaatgcatga
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