Brassica napus (rape): 106426639
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Entry
106426639 CDS
T04128
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
bna
Brassica napus (rape)
Pathway
bna04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
106426639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bna04131
]
106426639
Membrane trafficking [BR:
bna04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
106426639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
Clathrin
VPS8_N
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_RIG_2nd
WD40
Beta-prop_WDR3_1st
Beta-prop_WDR36-Utp21_1st
WD40_WDHD1_1st
ANAPC4_WD40
WD40_Gbeta
TPR_VPS8_2
Beta-prop_Aladin
Beta-prop_EML_2
Beta-prop_THOC3
WD40_Prp19
zf-RING_Vps41
Beta-prop_HPS5
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML
Beta-prop_CAF1B_HIR1
DUF7155
Motif
Other DBs
NCBI-GeneID:
106426639
NCBI-ProteinID:
XP_013722805
LinkDB
All DBs
Position
C9:760249..768640
Genome browser
AA seq
1896 aa
AA seq
DB search
MNKSHVELDLDSFLVSDSDSEPDSDPSSVPHRTVDEILNASSSSSPSSSPPPSPPPLLNR
RNQNARPQSEIHRVTDPTRRNPAPSTSLRQLPLPSLFAGVRSNVKPGAALAAAVAASRLV
PTPHAAIIKSRRASSASSELLLGAGEEEDHEVLSSNGDSAGIAADSVSVEDKDDGATSLA
SQDNEAKVMEVQASDIADYEKNSKPDLVTASSGVDVEEDVSAEQEAKTFTKAGDAAVDGV
KDETMFVAPSAESSASLHLNDSDDVKVSNDEESSDGDVKNDDSDVTILDSKEEEEGGDDA
LVPDDGSSVSGISELVEERIEEMEKERMSKREKLKSRSFRKQLVLAEEFEKKQAYTGLHW
EEGAAAQPMRLEGVKIGSTNLGYFDVDTSNMVSRTVSSQAFKRDHGSPQVLAVHLNFIAL
GTSKGVIVVVPSKYSSDTADQMESKMIWLGLQGERSHSPVTSVCFNQQGGLLLAGYGDGH
VTVWDVQRASAAKVITEHTAPVVYAFFLGRDSQGSRIFKIITSDTKGVVFKHTFSWTLLL
NMYTVKTQCLLDGQKNGMVLSASPLPDENFGSSLASSKAGNTATPSSSISSMVGGVVGVD
SSWKLFNEDSSAVEEGVVVFVTYQTVLVVKLIPNLEVYAQLPRPEGVREGSMPYTAWKCS
IENSSKEAEDRVSFLAIAWDRRVQVAKLVKSKLKECAKWSLDSAAIGVVWLDDQLLVIPT
VTGHLYLFTRDGVVIHQTSFSVDGSSGNDLISYHTYFTNVFGNPEKAYHNSVGVRGASVY
ILGTARLVISRLLPWKERVDVLRRGGDWMGAFNMAMSLFNGQAHGVVDLPKTVDAIREAI
APSLAELLLSYVDEVFSYITIAFSSQIEKNGVTNEPNGGTNNVNLEIEEQYNRVGGVAVE
FCVHINRMDLLFDEIFSRFVAVQQRDTFLELLEPYILKDMLGSLPPEIMQALVEHYSRKG
WLQRIEQCVLHMDISSLDFNQVVRICREHGLYGALLYLFNKGLDDFRSPLEELLIVFRNS
ERQRSTAIGYRMLVYLKYCFLGLAFPPGHGTLVPTRLPSLRTELIQFLLEKSNAHDSSRC
VTSPRIYLNLYHLLEMDTEATLDVLRYAFAESEMVDHETLSLESGEVSLESKTDGSISED
RCNDILIQNVIEALVHIIDGGFSQLDESGDPDDSKSDKKWPSKEDTSHLFEFVAYYAARG
RASIPKSLLAQILDYLTSDHILPTYNMSPKMRENQFLNLLQAVPETNWDVAYVSQLCEKA
HFYQVCGYIHTIGRRYVAALESYMKEAEEPIHSFCYVNKMLSQLNGNEFTAFQSAVIDRI
PELLELSREGTFFLIIDNLKDNITRIQEQLHSHPRSMFLYLKTVIEVHLSGSLDFSRLRK
HEAVDSLGENTRRNIPKEAELYLEGLNNFPKFIQDNPVNVTDDMIELYLELLCKYEPKSV
LRFLETFDNYRVEHCLRLCQKYGIADAAAFLLERVGDAASALSLTLSGLGEKFVALENAV
TCLISELKLGANEVATLEQSTSALELKEVNDIQGVLQACIGLCQRNTPRLNPEESEILWF
RFLDTFSEPLMDSYREPRTVDEVNKGTSSVKSLELCVDEIVDTIKWRIPRSNVAGTQILR
KLMSQFIKEIVEGMIGYVRLPTIMSKLLSDNGTQEFGDFKLTILGMLGTYGFERRILDTA
KSLIEEDTFYTMSLLKKGASHGYAPRSLLCCICNCPLTKTFSTLCVRVFNCGHATHLQCE
VSESETSSSSSSSGCPVCMTKKTTQSSSKGKSFYLDYGLISTVSSSTGTSQRASPYSYEN
EMIDHSHSQQISRFEMLTKLQKDQRLVQIESLPRLKLSPPAVYHEKVSRVSGFTPGESSG
KDTKPSQSGLMSKKMKAKGSIFRPRLAFGKDKTSRR
NT seq
5691 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagtcgcacgtggaactcgatctcgattcgtttctagtatccgactccgactcc
gaacccgattcggatccttcctccgttcctcaccgcacagtcgacgagattctcaacgcc
tctagctcctcgtctccctcttcttctccaccaccatctccgccgccgttgctcaaccgc
cgtaatcaaaacgcgagacctcaatccgaaatccatcgcgtaaccgatccgacgcggcgg
aatccggcaccgagtacttcgttgaggcagttgccgttgccgtcgctgttcgcgggagtg
aggtccaatgtgaagccgggagcggcgcttgcggcggctgtggcggcttccagattggtg
cctacgccgcacgctgctataatcaagtcgaggagagctagtagtgccagtagcgagttg
cttttgggcgctggagaagaagaagatcatgaggtcttatcatcaaatggagattctgct
ggaattgctgcagattccgtttctgtggaggataaggatgatggagcaacttcacttgca
agtcaagataacgaagctaaagtaatggaagttcaagctagtgatattgctgattatgag
aaaaactcaaagcctgacttagtcactgcctcctctggtgttgatgttgaagaagacgtc
tctgcagaacaagaggcaaagaccttcacgaaagccggagatgctgctgttgatggagtg
aaagatgagacaatgtttgtcgctccttctgcggagtcttcagcgtctttacatttgaat
gattctgatgatgttaaggtaagtaatgatgaggagtcaagtgatggagatgttaagaat
gatgattcagatgtaactatactagattctaaagaagaggaggagggaggtgatgatgct
cttgttcctgatgatgggagctcagtgtccggcatttcggagcttgtagaagagaggatt
gaggagatggaaaaagaaaggatgagtaaaagggagaagctaaagtcgcgatcttttagg
aagcagcttgtcttggctgaagagtttgagaagaaacaagcatatactggtttgcattgg
gaggaaggagctgctgctcagccaatgagacttgagggtgttaagattgggtcgacgaat
ctaggttactttgatgttgatactagcaatatggtcagccgaaccgtttcgtcgcaggca
tttaagcgagaccatggttctccgcaggttttggctgttcatttgaattttatcgcgttg
ggtacgtccaagggggtcatcgtcgttgtacctagtaaatattcttctgatactgcagat
cagatggaatcaaagatgatttggcttggtttacaaggagaaagatcgcattctccggtt
acctcagtttgcttcaatcagcaagggggactcctgctagctgggtatggtgatggacat
gttacagtttgggacgtgcagagagcgtcggcagcaaaagtgatcaccgaacacactgca
ccagtagtatatgcgttttttctaggccgggattctcaaggctctcgcatattcaaaata
attacaagtgacactaagggtgttgttttcaaacatactttctcttggactctgctgttg
aatatgtatacagtaaaaacgcagtgtcttctcgatggacaaaaaaatggaatggtccta
tcggcatcacctctgcctgatgaaaattttggaagctccttggcctcttctaaggcgggt
aacactgcaactccatccagcagtataagcagcatggtcggaggtgttgttggggtggat
tcaagttggaagctctttaatgaggattcgtctgcggtggaagaaggggttgtcgtattt
gtaacctatcaaactgtattggtggtaaagctcattccaaacttggaggtgtatgcacaa
cttcctaggcctgaaggggttcgggagggttccatgccatacactgcctggaaatgttca
attgaaaactcttctaaggaggctgaagatagggtttcgtttcttgccattgcctgggat
cgtagagttcaggttgccaagttggtaaaatcaaaattaaaggaatgtgccaaatggtcg
cttgacagtgctgctattggtgtggtttggctggatgatcagttgctggtgatcccaact
gtgacgggccatttatatctgttcacaagagatggtgtggtaattcaccagacaagcttt
tctgtggatggttcttcggggaatgacctgatttcttatcatacgtactttacaaacgtc
tttggaaatcctgagaaagcttatcacaactctgtgggtgtcagaggggcttcagtatac
attctcgggactgcacgtcttgttatctccagacttttgccatggaaggagcgggttgat
gttttaaggagaggaggtgactggatgggtgcttttaacatggcaatgtcactttttaat
gggcaagctcatggggttgttgacctccccaaaactgttgacgccataagggaagcaata
gcacccagtttagcagagttgctactttcctatgtagatgaagtattttcttatatcaca
atagcattttccagtcagattgaaaagaatggagtaactaatgagccaaacggtggaacc
aataatgtcaatttagagatagaagaacaatacaatcgtgttggtggtgttgccgttgaa
ttctgtgttcatattaacaggatggatttgctcttcgatgagatattttccagatttgtg
gctgtacaacaaagagatacatttttggagcttttggagccttatattctaaaggatatg
cttggatcgcttcctccagagattatgcaagctctggtagaacattatagtaggaaagga
tggctacaaagaattgagcagtgtgttcttcacatggatatttcttccttagatttcaat
caggttgtcagaatttgccgtgagcatgggctttatggggccttactctatcttttcaac
aaagggttggatgatttcaggtcacctctggaggagcttttgattgtcttccggaacagt
gagagacaaaggtctacagccattgggtaccgaatgcttgtttatctaaagtactgcttt
cttggtttggcttttccaccagggcatggaaccctggttcctacgcgcttaccatccctt
aggactgagttgattcagtttctactggagaaatcaaacgcccatgattctagtagatgt
gtaacatctccacggatttacttgaacctctaccatctgctagagatggatactgaagcc
actttagatgtcctaagatatgcatttgcagaaagtgaaatggtagatcatgagaccctt
tcgcttgagtctggtgaagtaagtttagagtccaagaccgatggcagtatctcggaagat
agatgtaacgatatattgatccagaatgtgatagaggccctagttcatattattgatggg
ggctttagtcaacttgatgaatctggggatccagatgattcaaaatcagataaaaagtgg
ccctctaaggaagatacgagtcatctatttgagtttgttgcatattatgcagcacgtgga
agagctagtattcccaagagcttattggcacagattttagactacttaacatcagatcac
attcttccgacttataacatgtctcctaaaatgagagagaaccaatttctaaaccttctg
caagccgtaccggagactaattgggatgtagcttatgtatctcagctttgtgagaaggca
catttttatcaggtctgtggctatattcatactattggtcgacggtacgttgctgcttta
gaaagctacatgaaagaggcagaggaacccatacattcgttttgctatgtgaacaagatg
ctttcgcagttgaatgggaatgaattcactgcttttcaatctgcagtaattgataggatt
cctgagctccttgaattgagcagagagggaacattcttcctgatcattgataatctgaaa
gacaacatcacacgcattcaagagcagctccattctcatccaagaagcatgttcctttat
ctcaagactgtcattgaggttcacttgtctgggagtcttgatttttctcgtctaagaaaa
catgaagcggtggacagtttgggtgaaaacactagaaggaatatacccaaagaggctgag
ctttatttggaaggacttaataactttcccaaattcattcaagataatccagtcaatgtg
actgatgacatgattgagctttacttggagctattatgcaagtatgaaccgaagtcagtg
ttgagattcctcgaaacatttgataactacagggtagaacactgtctacgcctctgccag
aaatacggaattgcagatgcagcagcatttctcttggagagggtcggtgatgcagcaagt
gctttgtcacttacactctctggactcggtgaaaaattcgtcgcgcttgaaaacgcagtg
acttgccttatctcagaactaaagctgggtgctaacgaagtagccaccttggagcaatcc
actagtgctctagagttaaaggaggtaaatgacatacaaggtgttctgcaagcctgtata
ggattgtgccaacgcaacactcctcgccttaatcctgaagagtctgagattctttggttt
cgctttcttgacactttctcagagcctttgatggattcatatcgggaaccaaggactgtc
gatgaagtaaacaaaggcacttccagtgttaaatcattggaactgtgtgtagatgaaata
gttgacacaatcaagtggaggattccacgatctaatgtcgccggtacacagatcctgagg
aagctcatgtctcagtttatcaaagagattgttgaaggaatgataggatacgttcgtctt
ccaacaatcatgtcaaaacttctttctgacaacggtactcaagagtttggtgatttcaaa
cttacaatactgggaatgcttggaacatatggcttcgagaggagaatactggatactgca
aagtctttaatcgaagaggatacattctacacaatgagtttactcaagaaaggtgcttct
cacggttacgcacccagaagtttgctttgttgtatatgcaattgtcctctcaccaagacc
ttctctactctctgtgtccgtgttttcaactgtggccacgcaacgcatctgcaatgtgaa
gtgtcggagagtgaaacatcatcatcatcatcttcatcaggttgtcctgtttgtatgacc
aagaagaccacacagagttcatccaaaggtaaatcattctacttagactatggactgata
agcacagtttcttcaagcaccggcacttcacaacgcgcttcgccttactcttatgagaat
gaaatgatcgatcattctcatagccagcaaatatcacgatttgaaatgctaaccaagcta
cagaaagatcagagactggtacagatagagagcttgcctcgactaaagctttcgcctcct
gctgtgtaccacgagaaagtgagcagagtctcgggttttacaccgggagagagcagtggt
aaagacacgaaaccatcccaaagtggactgatgagtaagaaaatgaaagcgaaaggatct
atctttcggccaagacttgcttttggaaaggacaagacgagcagaagataa
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integrated database retrieval system
