Brassica napus (rape): 106427448
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Entry
106427448 CDS
T04128
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 34
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Pathway
bna03013
Nucleocytoplasmic transport
bna03015
mRNA surveillance pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106427448
09122 Translation
03013 Nucleocytoplasmic transport
106427448
03015 mRNA surveillance pathway
106427448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106427448
03041 Spliceosome [BR:
bna03041
]
106427448
03009 Ribosome biogenesis [BR:
bna03009
]
106427448
03012 Translation factors [BR:
bna03012
]
106427448
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106427448
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106427448
mRNA cycle factors
Stress granule specific factors
106427448
Spliceosome [BR:
bna03041
]
Complex C
Other components
EJC/TREX
106427448
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
90S particles
Helicases
106427448
Translation factors [BR:
bna03012
]
Eukaryotic type
Initiation factors
eIF-4
106427448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
Helicase_RecD
AAA_22
CMS1
Utp25_C
Flavi_DEAD
CbiA
Motif
Other DBs
NCBI-GeneID:
106427448
NCBI-ProteinID:
XP_013723637
UniProt:
A0A078J6R0
LinkDB
All DBs
Position
A8:2080740..2083169
Genome browser
AA seq
404 aa
AA seq
DB search
MAAAKGNSDWRSVGGALDDENLVFETTKGIKPIASFDEMGMNDKVLRGVYDYGFKKPSEI
QQRAVMPILKGRDVIAQAQSGTGKTSMIAISVCQIVNTSSRKIQVLVLSPSRELASQTEK
TIQAIGVHTSIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKSVKLL
ILDESDEMLSKGLKDQIYDVYRSLPHDIQVCLISATLPQEILEMTNKFMTDPVRILVKRD
ELTLEGIKQYYVDVGEEEWKFDTLCDLYGRLVINQAIIFCNTRQKVDWLTEKMRSSNFIV
SSMHGDKRQKERDEIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDVPNNPELYIHR
IGRAGRFGREGVAINFVKNSDMKTLRDIERYYGTKIREMPADLA
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagcgaaaggaaacagcgactggagaagtgtaggaggagctttggatgacgag
aatcttgtcttcgaaacgaccaaagggatcaaacccatagcgagtttcgacgagatgggg
atgaatgataaagtccttcgcggagtgtacgactacggtttcaagaaaccttctgagatt
cagcagagagctgtgatgcctattctcaaaggacgtgacgtcatcgctcaggctcagtcc
ggtacgggcaaaacctccatgattgccatctccgtctgccaaatcgtcaacacttcctcc
agaaagattcaggttttggtcttgtctccatcaagggaactggcttcacaaacagagaag
acgatacaggccattggagtacacaccagtatacaggcacatgcctgcatcggtggtaag
agcattggagaagacatcaagaagctggagcgtggtgtgcacgctgtgtccgggacgcct
ggtcgagtctacgatatgataaagagagggagcttacaaaccaaatccgtcaagcttttg
atccttgatgaatcagatgaaatgctgagcaaaggtttgaaagaccagatctacgacgtt
tacagatctcttccacacgatattcaggtttgcttgatatctgctactcttcctcaagag
attctggagatgacaaacaagtttatgacggaccctgtgaggatacttgtgaagcgtgac
gagttaactctcgaagggattaaacaatattatgttgatgttggggaagaagagtggaag
ttcgatacactttgtgatctttatgggaggcttgttatcaatcaagcaatcatcttctgt
aacacaagacaaaaggtggattggctaactgagaagatgaggagtagtaactttatagtc
tcgtcaatgcatggagacaaacgtcaaaaggagagagacgaaatcatgaaccagttccgg
tcttttaaaagccgtgtcttaatcgcctcggatgtatgggcacgagggattgatgttcag
acagtttctcatgtcataaactatgatgtaccaaataacccggagctttacatacatcgc
attggacgagctggtcggtttgggagggaaggtgttgcgattaactttgtgaaaaactct
gacatgaagactcttcgtgacattgagaggtactacggtactaaaatccgggagatgcct
gctgatcttgcctaa
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