Brassica napus (rape): 106427881
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Entry
106427881 CDS
T04128
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106427881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106427881
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
106427881
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
106427881
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
106427881
NCBI-ProteinID:
XP_013724053
UniProt:
A0A078G6N6
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Position
C1:complement(49792745..49794663)
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AA seq
288 aa
AA seq
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MVGVSFGEQQFIKGGIAQDLRTDGRKRLTYRDIYVETGVIPQANGSARVRIGGTDVIASV
KAEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQICLLGGKSGAGA
GINLSSLLIKEGRVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVQVSAEVADD
EQPEIDISDEEYQQFDTSSVPVIVTLTKVGNHYIVDATAEEESQMSSAVSISVNRGGHIC
GLTKRGGCGLDPSVILDMISVAKHVSETLMNNLDSKISAAEACEDDES
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atggtgggggtttcgtttggggagcaacagtttattaaaggtgggattgctcaggacctt
cgaactgatggtcggaaaagattgacttaccgtgacatctacgtcgaaaccggcgttatt
ccgcaggctaatggttcagcgagagttaggataggtggaactgatgtcattgcaagtgta
aaggctgagattgggaggccaagttcacttcaacctgataaaggaaaggttgctgttttc
attgattgcagtccaacagcagaacctacatttggggggagaggtggtgaggagttgtct
tctgagcttgctttggctcttcagatatgtcttcttggtggcaaaagtggagcaggagct
ggtataaatttatcttcgcttttgatcaaagaaggaagagtctgctgggacctttacata
gatggccttgtcattagttcagatgggaatctattggatgcacttggtgctgccatcaag
gctgctttaacgaatacagctataccaaaagtccaagtttcagctgaagtggcggatgat
gagcaaccagagattgacatcagcgacgaagagtatcaacagtttgatacttccagtgtc
ccagtcatagtcacgttaactaaagtggggaatcattacatagttgatgcgacagcggaa
gaggagtctcagatgagctcagctgtttctatatccgtgaaccgtgggggacatatctgt
gggttaaccaaaagaggcgggtgtggtttagacccgagcgtcatacttgacatgatctct
gtggccaagcatgtgtcagagactctgatgaacaatcttgattctaagatttcagctgca
gaggcctgtgaagacgatgagtcttga
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