Brassica napus (rape): 106427894
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Entry
106427894 CDS
T04128
Name
(RefSeq) polygalacturonase
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106427894
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
106427894
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Motif
Other DBs
NCBI-GeneID:
106427894
NCBI-ProteinID:
XP_048615338
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Position
A1:complement(28895379..28897166)
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AA seq
397 aa
AA seq
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MGSYLGIYTILVLCLLGYSANAEVFTAGGPPNSDITAAVLKAFTSACQAPAPSQVLIPKG
DFKLGETVMTGPCKSPIEFTLQGNVKADGGSTQGKDRWVVFEKINGFKLNGGGTFDGEGN
AAWKANNCHKTFECKKLPISVRFDFVDNAEIKDITSLDAKNFHFNVISGKNMTFDNIKII
APAESPNTDGIHLGRCEGVKILNTKIATGDDCISVGDGMKNLLIEKVVCGPGHGISVGSL
GRYGWEQDVTDINVKNCTLEGTDNGLRIKTWPSAACTTTAAGIHFEDIILNKVSNPILID
QEYCPWNQCNKNKPSTIKLVDITFRNIRGTSGNKDAVKLLCSKGHPCENVEIGDINIDYT
GPDGPPTFECTNVTPKLVGTQNPKACVGPVVKAPGKE
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgggttcatatttgggaatctatacaattttggttctatgtttgctaggatattcggcc
aatgctgaggtgttcactgctggtggtcctccaaattctgatattaccgcggcagttctt
aaagcattcacatcggcatgtcaagctccggcaccaagccaggtgctgatcccaaaaggt
gacttcaagcttggtgagaccgtgatgactggtccatgcaaatctccaatcgagttcacc
ttgcaaggcaacgtgaaagctgacggtggctctacccagggaaaggatagatgggttgtg
ttcgaaaaaattaatggttttaagttgaacggaggtggaacatttgacggtgaaggcaat
gcagcttggaaagccaataactgccacaagacttttgagtgcaagaaacttcccatcagt
gtaaggtttgattttgtggataacgctgagataaaagacataacctcattagatgccaaa
aacttccacttcaacgttatcagcggcaagaacatgacctttgataacatcaagatcatc
gctccagctgaaagccccaacactgacggtatccatttgggaagatgtgagggagtcaag
atcctcaacactaagatcgccacaggagatgactgcatctccgtgggagatgggatgaag
aatctcctcattgagaaagttgtgtgcggtccaggacacggaatcagtgttggaagcctt
ggaaggtacggatgggagcaagatgtcactgacattaacgttaagaactgtaccctcgag
ggaaccgacaacggtctgaggatcaagacatggccatctgccgcttgcaccaccactgct
gccggtattcattttgaggatatcatccttaacaaagttagcaacccaatcctcatcgac
caggagtactgcccttggaaccaatgcaacaagaacaaaccatcaacaattaagctggtg
gacattaccttcaggaatattagaggaacatcagggaacaaggacgcagtgaaactattg
tgcagcaagggacatccatgtgagaacgttgagattggagacattaacattgactacaca
ggacctgacggtccacccactttcgagtgcacaaacgtcacacctaagcttgtgggaacc
cagaacccaaaggcttgcgttggacctgtggtcaaggctcctggcaaagagtaa
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