Brassica napus (rape): 106428135
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Entry
106428135 CDS
T04128
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106428135
09123 Folding, sorting and degradation
03018 RNA degradation
106428135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106428135
03041 Spliceosome [BR:
bna03041
]
106428135
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106428135
mRNA degradation factors
5'-3' decay
Lsm complex
106428135
Spliceosome [BR:
bna03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
106428135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
106428135
NCBI-ProteinID:
XP_013724335
UniProt:
A0A078H7W2
A0ABQ8EE60
LinkDB
All DBs
Position
C9:2698088..2698984
Genome browser
AA seq
89 aa
AA seq
DB search
MASNNPSQLLPSELIDRCIGSKIRVIMKGDKELVGVLKGFDVYVNMVLEDVTEYEITAEG
SRVTKLDQILLNGNNIAILVPGGAPEDVE
NT seq
270 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcaacaatccgtcgcagcttcttccatcagagctaatagacaggtgcataggg
tcgaagataagggtgataatgaaaggagacaaggagctcgttggggttctcaaaggcttc
gacgtttacgtcaacatggtccttgaggatgtcaccgagtatgagatcacagcagaagga
agccgtgtaacgaagcttgatcagattctactcaatggcaacaacatcgccattttggtg
ccaggtggagctccagaagacgtagaatga
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