Brassica napus (rape): 106428211
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Entry
106428211 CDS
T04128
Name
(RefSeq) rhamnogalacturonate lyase-like
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
106428211
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
106428211
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
Y_Y_Y
Motif
Other DBs
NCBI-GeneID:
106428211
NCBI-ProteinID:
XP_048591520
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Position
A7:18069589..18074776
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AA seq
686 aa
AA seq
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MAKKLIALAFTLIILFAIHNNSRFFVLIFLLPGVHSRTSRNKLGIAKPEQKLASGRLTLK
KVGPNQVVVDNGIIQVTFSSPQGLITGIKYKGFDNVLNNKIKNRGYWDVMWYEPGQEQLI
DLLEGVKFNVINQTSEHVEISFSRAWKISQRGSLVPLNVDKRYIIRRGVSGIYMYAVLEK
LKGWPTVDMDQTRIVFKLNTKFDFMAISDQRQKIMPSEIDRDITNKRANPLAYKEAVRFV
NPQNRIFKGQVDDKYMYSMENKDNKVHGWISSDQRVGFWMITPSDEFRVCGPLKQELTSH
VGPTTLSMFTSLHYAGKDMNTTYTSMEPWKKVYGPVFVYLNSASSTNLLWTDAKRQMVEE
VHSWPYDFVKSVDYPLHQQRGTVKGQFFVMDRYISNKSKLFGKFAFVGLAVPGEAGSWQT
ENKGYQFWTTADRMGIFTITNVRPGSYNLYAWVSGHIGDYKYERDITITPGREIDVGAIL
YEPPRIGATLWEIGKPDRTAAEFYIPDPDPILSTKLYLNNSYQPQDRFRQYGLWDRYTAL
YPRNDLVYIVGVSDYKKDWFYAHVTRNAGNGTYQATTWQIVFSLKAVIKTGNYTFRMALA
AATTANLSVRINEPKSKPIFLIGLIGQDNAIARHGIHGLYNLYDINVGGNLLRVGNNTIF
LTQDRRWGSFTGVMYDYLRLESPPEV
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaactaatagctctcgcattcactcttataattctcttcgctattcataat
aactcgcgtttttttgttctaattttccttcttccaggtgttcattcccgaacgtcaaga
aacaagttaggcatcgcaaagccggaacagaagctcgcatctggccggcttacgcttaaa
aaagttggtcctaaccaagtggtcgttgataacggtatcatccaagttaccttctcaagt
ccacaaggtttaataactggaatcaagtacaagggctttgacaatgtgttgaacaacaaa
attaaaaatcgtgggtattgggacgtaatgtggtatgaaccaggacaagaacaactaatc
gatcttttagaaggagtaaaattcaacgtcataaatcaaacaagtgagcatgtcgagatt
tcattttcacgagcttggaagatttctcaacgtggctcactggtcccgttaaatgtagac
aaacgatatatcattcgaagaggggtatctggaatatacatgtacgctgtgttagagaag
ttaaaaggctggccaactgtggacatggaccaaacaaggatcgtcttcaagcttaacaca
aaatttgattttatggctatatctgatcaacggcaaaaaattatgccttctgaaatcgac
cgagatattactaataagcgtgctaatccattagcttataaagaagctgttcgttttgta
aatccccaaaatcgtatatttaaagggcaggttgacgataagtatatgtattcgatggaa
aacaaagacaacaaagtacatggctggatctcgtccgaccaacgtgtcggcttctggatg
attactcccagcgatgagttccgtgtctgtgggcccctcaaacaagaactaacttctcat
gttggacccaccacactctccatgtttacaagtttacattacgcggggaaagatatgaac
acaacttatacaagcatggagccgtggaagaaggtgtatggtcctgtctttgtttatctc
aactctgcctcctctactaatcttctctggaccgatgctaaacgacagatggttgaggag
gtccatagttggccatatgatttcgtgaagtcagttgattaccctcttcatcaacaaaga
gggacggtcaaaggtcaattctttgtaatggacagatacataagcaacaagtcgaagtta
tttgggaaatttgcttttgtgggtttagcagtgcccggtgaagctggttcatggcaaacc
gaaaacaagggatatcaattttggacaacagcagacagaatggggatattcacaataacg
aatgtgagaccagggagttataatctctatgcatgggtttctggacatattggtgactat
aaatacgagcgtgacattaccatcacaccaggcagggagatagacgtaggagccatactg
tatgaaccgcccagaatcggcgctacactgtgggaaatcggaaaaccagaccggactgct
gcagagttctatatcccagatccggacccaatcctttcgaccaaactctatcttaataac
tcttatcaacctcaagaccgatttagacaatatggtctatgggatcggtacactgctttg
tatcctcgaaatgatcttgtttatattgttggagtaagtgattataaaaaagactggttc
tatgcacatgtgaccagaaatgctggaaatgggacatatcaagcaacgacatggcaaatt
gtgtttagtttgaaagcagtgattaaaactggaaactacacgtttcgaatggctttggct
gcagccacgactgcaaatttatctgttcggatcaacgagcctaagtccaaacctattttc
ttgattgggctaataggtcaagataacgcgatcgctagacatgggattcatgggttatac
aacttgtatgatatcaatgttggtggaaacttacttagggttggtaataatacgattttt
ctcactcaagatcggagatggggttcgtttacaggtgttatgtatgattatctacgtctg
gaaagtcctccggaagtttga
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