Brassica napus (rape): 106428402
Help
Entry
106428402 CDS
T04128
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106428402
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106428402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Hyphal_reg_CWP
Motif
Other DBs
NCBI-GeneID:
106428402
NCBI-ProteinID:
XP_013724615
LinkDB
All DBs
Position
A3:complement(678825..683243)
Genome browser
AA seq
510 aa
AA seq
DB search
MVAHKRVHLRPTCICIIWFCLLVSLPHHGRASSFNLSLPHQHPFPEHVVLNVQRKLNDSL
SRRNLLTYQQDDATAASSPPIPSCLTGNPIDDCWRCDPNWSQNRQRLADCSIGFGQGTLG
GKGGRFYLVTDSSDNDAANPLPGTLRHAVIQPEPLWIIFSGDMGITLRHELIVGSFKTID
GRGTNVQITGHGCLTIQQVSHVIIHNVHIHHCKPSGNTLVASSPTHVGFRGVSDGDGISV
SASHHIWVDHCSLGYCSDGLIDVILASTAVTVSNNYFHHHDEVMLLGHDDRYTADSGMQV
TIAFNHFGEGLVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSANPTINSQGNRYTAPIDPN
AKEVTKRVDSNEKHWGKWNWRTEGDVMVNGAFFVPSGDGVSPAYARATSLQAKTADVIDQ
LTVNAGVFGDPSGRNGQGGGFPGITGGGGTVTRGYSKGGPGGGSSDSDDGIFTMIFGSNS
SAAAVALRPRQVWSIVFTIILLWYFPHHRR
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggtggctcataagagggtccatcttagaccaacatgcatttgcataatctggttctgc
ctcttggtctctctccctcaccatggaagagcatcttccttcaatctttctctcccacac
caacacccattccctgaacatgttgttcttaatgttcaaagaaaactcaacgactctctc
tccagaagaaacctcctcacttaccaacaagacgacgccacggccgcgtcgtctccgcca
ataccttcttgcctcaccggaaacccaatcgacgactgctggcgctgcgacccaaactgg
tcgcaaaaccgccagcgcctcgccgactgctcaatcggcttcggacaaggcacgctcggg
ggcaaaggcggccgcttttacctcgtcaccgactcctccgacaacgacgcggcgaaccca
cttcccggaaccctccgccacgccgtgatacagccggaacctctctggatcatcttctcc
ggcgacatggggatcacgctccggcacgagctcatcgtcgggagcttcaagacgatcgac
gggcgaggcacgaacgtccagatcaccggccacgggtgcctgacgatacagcaggtgagc
cacgtcatcatccacaacgtccacattcaccactgcaaaccctccgggaacactctcgtc
gcttcttcgccgacgcacgtcgggttcagaggagtctccgacggtgacgggatctcggtc
tcggcttcgcaccacatttgggtcgatcactgctctctcgggtactgttccgacggactc
atcgacgtcatcttagcatcaacggcggtcacagtgtccaacaactactttcatcaccac
gacgaagttatgctcttaggtcacgacgacaggtatacggcggactcggggatgcaagtg
acgattgcgttcaaccattttggggaggggctagtgcagagaatgccacggtgtagacat
ggttacatccacgtggtgaataacgattttactgcatgggagatgtatgcaataggtgga
agtgctaaccctacgatcaatagtcagggtaaccgttacaccgcacctattgatcccaat
gctaaagaggtgacgaagcgtgtggactcaaacgagaaacactgggggaaatggaactgg
aggacggagggagatgttatggttaacggagcgtttttcgtaccgtcaggtgacggagtg
agtccggcgtacgcccgagccactagtcttcaggcaaagaccgctgatgttattgaccag
ctcacggtcaatgccggcgttttcggcgatcccagtggaagaaacgggcaaggaggaggt
ttccccggaatcacgggcggtggtgggaccgtcacacgcggttacagtaaaggtggaccc
ggaggcggtagcagcgacagcgatgatggcattttcacaatgatattcggtagcaattcc
agtgcggcggcggtggctttgaggccgagacaagtctggtcaattgtattcactatcatc
ttactttggtattttccacaccataggagatga
DBGET
integrated database retrieval system
