Brassica napus (rape): 106428793
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Entry
106428793 CDS
T04128
Name
(RefSeq) squalene synthase 1-like isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
bna
Brassica napus (rape)
Pathway
bna00100
Steroid biosynthesis
bna00909
Sesquiterpenoid and triterpenoid biosynthesis
bna01100
Metabolic pathways
bna01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
106428793
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
106428793
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
bna01006
]
106428793
Enzymes [BR:
bna01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
106428793
Prenyltransferases [BR:
bna01006
]
Terpene biosynthesis
Squalene/phytoene synthase
106428793
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Ortholog
Paralog
GFIT
Motif
Pfam:
SQS_PSY
DUF2615
Motif
Other DBs
NCBI-GeneID:
106428793
NCBI-ProteinID:
XP_022563005
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Position
C7:53393903..53396884
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AA seq
417 aa
AA seq
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MGSLGTFLRYPDDIHPLLKMKRAIEKAEKQIPPEPHWAFCYSMLHKVSRSFSLVIQQLGT
ELRNAVCVFYLVLRALDTVEDDTSIPTDEKLPILIAFHRHIYDTDWHYSCGTKEYKVLMD
QFHHVSAAFLELEKGYQEAIEEITKRMGAGMAKFICQEVETVDDYDEYCHYVAGLVGLGL
SKLFLASGSEVLTPDWEHISNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRKIWGKYAG
KLEDLKYEKNSSNAVQCLNEMVTDALTHIEDCLKYMAALRDPSIFRFCAIPQIMAIGTLA
LCYNNVQVFRGVVKLRRGLTAKVIDRTKTMADVYGAFYDFSCMLKTKVDKNDPNASKTLK
QLEDVQQLCRDNGVLHKRKSYVNDKGQSNNLYIVMLVILLAIVFAYLRANGGVSDEQ
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atggggagcttggggacgtttctgaggtaccctgatgatatacatccgctcctgaagatg
aaacgagcgatcgagaaagcagagaagcagatccctcctgagccacactgggccttctgc
tactcaatgctccacaaggtctctcgaagcttctctctcgttattcagcagctaggcacc
gagcttcgtaacgctgtgtgtgtgttctacttggttcttcgagctcttgatactgttgag
gatgacactagcataccaactgatgagaagctgcctatcttgatagcattccaccggcac
atttatgatactgactggcactactcatgtggtaccaaggagtacaaggttctaatggac
cagttccaccatgtttccgcagcttttttggaacttgaaaaagggtatcaagaggctatt
gaggaaattactaaaagaatgggtgcaggaatggccaagtttatctgccaggaggtagag
actgttgatgactatgatgagtactgccactatgttgctggacttgtgggtttaggcctc
tctaaactcttcctcgcttccggatcagaagttttgacgccagactgggagcatatttcc
aattcaatgggtttatttcttcagaaaacaaacattatcagagattatcttgaggacatt
aatgaaataccaaagtcccgcatgttttggcctcgcaagatttggggtaaatatgctggc
aagctcgaggacttgaaatacgagaagaactcaagcaatgcagtgcagtgcttgaatgaa
atggtcaccgatgctttgacgcatattgaagattgcctcaaatacatggctgccttgcgt
gatccttctatatttcggttctgtgctatccctcagatcatggcgattggaacacttgcg
ctatgctataacaatgttcaagtgtttagaggcgttgtgaaattgaggcgaggtcttact
gctaaagtgattgatcgtacaaagacaatggctgatgtctatggtgccttctatgatttt
tcttgtatgctgaaaacaaaggttgacaagaacgatccaaatgctagtaagacactaaaa
caactagaagacgttcagcaactatgcagagacaatggtgttcttcataagagaaagtct
tatgttaatgacaaaggacaatcaaacaatctttatattgtaatgcttgtgattctactg
gctatagtctttgcatatctcagagcaaacggaggggtcagtgatgagcagtga
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