Brassica napus (rape): 106428855
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Entry
106428855 CDS
T04128
Name
(RefSeq) putative pectate lyase 11
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106428855
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106428855
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106428855
NCBI-ProteinID:
XP_013725053
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Position
A9:2107851..2110595
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AA seq
412 aa
AA seq
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MFSYSSNPFVYTFIFLLSIGNRIAFSSSSSPQAQDPKLVVDEVNRSVFNASRRSLAYLSC
RTGNPIDDCWRCDPNWDTNRQRLADCAIGFGKNAIGGRDGRIYVVTDPGNDDPVNPIPGT
LRHAVTQEEPLWIIFKRDMVIKLQKELIITSFKTIDGRGASVHITDGPCLKIHEKTNIII
HGINIHDCKPGPGGMIRDGPDHTGMWIPSDGDAVAIFGGKNVWIDHCSLSNCDDGLIDAI
HGSTAITISNNHMTHHDKVMLLGHSDSYTEDKNMQVTIAFNHFGEGLVQRMPRCRHGYFH
VVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPDTRFNKEVTKHEDAPESQWRDWNWRSEG
DMLLNGAYFRQSGAGAPSTYARASSLSARPSSLVGSITTTAGALSCRRGGHC
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgttttcgtattctagtaatccttttgtttacacttttatatttctcctatcaatcggc
aacaggattgcattctcttcgagttcgtcaccgcaggctcaggatccgaagctagtagtt
gacgaagtcaatagaagtgtattcaatgcgtcacggaggagcctggcctacctatcttgt
agaaccggaaatccaatcgatgattgttggcgttgcgatccaaactgggacacaaatcgc
caacggctagccgattgtgctattgggtttggcaaaaacgccatcggaggccgcgacggc
cgaatttacgtggttacagatcctggcaacgacgatccagtaaaccctatacctggaacc
cttagacatgcggtgacacaagaagaaccattgtggatcattttcaagagagatatggtc
attaaacttcaaaaagaactcatcatcacatctttcaagaccattgatggtagaggcgca
agcgttcacattaccgatggcccttgcttaaaaattcacgaaaaaactaatatcatcatc
catggcattaacatccatgactgcaaaccaggacctggtggcatgattagagatggccca
gatcatactggaatgtggatcccatcagatggagacgcggtggcgatattcggagggaaa
aacgtgtggattgaccattgttcattgtctaactgcgatgatggtctcattgacgccata
catggttcgacggctataaccatatcgaacaaccacatgacacaccatgacaaggtcatg
cttttagggcatagcgatagttatacagaggacaagaacatgcaagtcaccattgcgttt
aaccatttcggagaagggctcgttcaaaggatgccacggtgcaggcatggatatttccat
gtggtgaacaatgattatactcactgggaaatgtatgccatcggtggaagtgcttctccg
acgatatacagccaaggcaatagatttctcgctcctgatactcggtttaataaagaggtt
acaaaacatgaagatgcacccgaaagccaatggagagattggaattggagatctgaaggg
gatatgttgttgaacggagcatatttcagacaatccggtgccggagctccatcgacttat
gcaagagcttctagcctaagtgcgaggccatcatcgcttgtgggttccatcactacgacg
gcaggagcactgagttgtcgacgaggtggtcactgttaa
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