Brassica napus (rape): 106429251
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Entry
106429251 CDS
T04128
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106429251
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
106429251
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
106429251
NCBI-ProteinID:
XP_022574274
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Position
A4:complement(20986558..20988625)
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AA seq
388 aa
AA seq
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MASLLFLFVFFFSISSCFAHSYNVLSFGAKPDGKTDATKEFMAVWETACASSRPVTIVVP
KGRFLLRSLNFDGSKCKPKPITFRIDGTLVAPADYRVIGNEDYWILFQHLDGVTVYGYGG
VLDAQGTSLWGCKTSGKNCPRGATTIGFQSSRNIVVYGLTSLNSQMFHVVINGCHNVKLQ
GVKVLAAGNSPNTDGIHVQSSSTVSIFSTKISTGDDCVSIGPGTNGLWIENVACGPGHGI
SIGSLGKDAVESGVQNVTVKTVTFTGTQNGARIKSWARPSSGFARNIRFQHCVMNNVDNP
IIIDQNYCPRSENCPRQVSGIKISDVLFVDIHGTSATEVGVRLNCSPKKPCTGIRLKDVK
LKYRNKPAASACVHAGGIEAGLFQPNCL
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atggcttcacttcttttcctcttcgtcttcttcttctccatctcctcttgctttgctcat
tcctacaacgtcttgtcctttggagcaaaaccggacggaaaaacagacgcaaccaaagag
tttatggcggtttgggaaacggcttgtgcctcgtctcgtcccgtgaccattgtggttcct
aaaggccggttcttgttaaggagccttaatttcgacggttccaagtgcaagcccaagccc
atcacgttccgtatcgacggtacattggtggctccggctgattatagagttatcggtaat
gaagattactggattcttttccagcatcttgacggagtcaccgtctacggctacggcgga
gttcttgacgctcaaggaacttctctatggggttgtaaaacatccggcaagaattgtcct
agaggagccacgaccatagggtttcagagctcaagaaacattgtggtctacgggctgacg
tcactcaacagccagatgttccacgtcgtcatcaacggttgtcacaacgtaaagcttcaa
ggagtcaaagtattagccgcaggaaacagccccaacacagacggtatccacgttcagtct
tcctccaccgtctctatcttcagtaccaaaatttccaccggcgacgattgtgtctccatc
ggtcccggaaccaacggtctatggatcgaaaatgtagcatgtggtcccggtcacggcata
agcattgggagcctgggaaaagatgcagtggagtcaggtgtacagaacgtgactgtcaaa
acggtgacgtttacggggacgcaaaacggagcgaggatcaaatcatgggccaggcccagt
agtggattcgctaggaacatccgcttccaacattgtgtaatgaacaacgtagacaacccc
ataattattgaccaaaactactgtcctcgtagcgaaaattgccctcgccaggtttcgggt
atcaaaatcagcgatgtgttgttcgttgatatacatggaacatcggcaactgaagttgga
gtgagacttaattgtagtcctaagaaaccgtgtaccggaattcgacttaaggatgtgaaa
ttaaagtaccgtaataaaccggctgcgtcggcttgtgttcatgccggagggatagaagct
ggattgtttcagccaaactgcctatga
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