Brassica napus (rape): 106429282
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Entry
106429282 CDS
T04128
Name
(RefSeq) probable polygalacturonase At2g43860
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106429282
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
106429282
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
LysM3_LYK4_5
NosD
Motif
Other DBs
NCBI-GeneID:
106429282
NCBI-ProteinID:
XP_013725480
UniProt:
A0A078GYZ1
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Position
A4:complement(20980356..20986364)
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AA seq
410 aa
AA seq
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MIHKTSGLLLLPLTLIFLDFILISSLANPTPITSLNVLTYGAKPDGSKDSTKAFLAAWEA
ACASPNPTTIIVPKGRFLVGNLVFQGNKCTNAPISFRIAGSIIAPEDFRVIASSLQWIMF
DGVTNVSIYGGVLDAQGSSLWKCKNSGGKKCPTGAKTLLFTDSNNISIYGLTSINSQKFH
IVIDQSNNVKIDGVKVSADADSPNTDGIHIENSHSVNITNSRIGTGDDCISIGPGSTHVS
IQGIQCGPGHGISIGSLGRSEDEQGVENVMVSNVDFMSTDNGVRIKTWGKDSKSFVRNIV
FQHIKMKMVKNPIIINQHYCLDKPCPKKESGVEISNVRYEDIQGTSNTEVAVMLDCSKDK
PCTDIVMGNVNLVLQMVNGSAQASCNNANGLANDVVVPFTPCLKRDLLLT
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgattcacaaaacatcaggtcttcttcttcttcctctgactctcatctttcttgatttc
atcctaatctcatcattagccaacccgaccccaatcacatccctcaatgtcttaacctac
ggagctaaaccagatggctcaaaagactcaaccaaagccttcttagccgcgtgggaagcc
gcatgtgcctctccgaatcccacaactattattgtaccaaaaggacggttcttggtcgga
aaccttgtattccaaggcaacaaatgtacgaatgctccaatatcttttcgtatagccggc
tcaattattgcaccggaagattttagagttatcgcaagctcactacaatggatcatgttc
gatggagtcactaacgtttcaatctacggtggtgtacttgacgcacaaggctctagtttg
tggaaatgcaagaacagtggtggcaaaaaatgccctactggcgctaagactttgttattt
actgattcgaataacatcagtatctacggtttaacgtcgatcaatagccagaagttccat
atagttatcgaccagagcaataacgttaagattgacggcgttaaagtttctgctgatgcg
gatagccctaacaccgatgggattcacatcgagaactctcactcagtgaatatcactaac
tcaagaattggaaccggggacgattgcatctccatcggtccaggatccactcatgtttct
atacaaggcattcaatgcggtccaggccatggcatcagtatcgggagtcttgggagatca
gaggacgagcaaggagtggagaacgtgatggtgagtaacgtggatttcatgtcaacggat
aacggagttaggatcaagacatggggaaaagatagcaagagtttcgtacgaaacattgtt
ttccaacatattaaaatgaagatggtcaagaacccgattatcataaaccaacactattgt
cttgacaaaccttgccctaaaaaggaatctggagttgaaatatcaaatgtgagatatgaa
gatatacaagggacatcgaatacggaagtggcggttatgttggattgtagtaaggataaa
ccatgtaccgatattgtaatgggtaatgtgaatctcgtcttgcaaatggttaatgggtcg
gctcaggcttcttgcaacaatgcaaatggattagctaatgatgtcgttgtcccgttcact
ccttgtctaaagagagacttgcttttgacatga
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