Brassica napus (rape): 106429512
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Entry
106429512 CDS
T04128
Name
(RefSeq) RNA-binding KH domain-containing protein PEPPER
KO
K21444
poly(rC)-binding protein 3/4
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106429512
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
106429512
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Gene cluster
GFIT
Motif
Pfam:
KH_1
KH-I_KHDC4-BBP
KH_2
KH_5
KH_PARP14_5
Motif
Other DBs
NCBI-GeneID:
106429512
NCBI-ProteinID:
XP_013725718
UniProt:
A0A078IKQ1
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Position
C8:22930831..22935163
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AA seq
492 aa
AA seq
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MASVADSVDNGATIFPENQTPIPSGVTATTLLNENSDAFPELNQPDSSAAAERWPGWPGD
SAAERWPGWPGDCVFRVIVPIAKVGAIIGRKGDIIRKMCEETRARIKVLDGPATTQDRVV
LISAKEDLEAYMSPAMEAVVRVFRRVSELPDNDDDDDVQKAGSAVSSVRLLVASMQAISL
IGKQGSSIKAIVENSGASVRILSEEETPFYAGQDERIVDVQGEALKIAKALEAIVGHLRK
FLVDHSVVPLFEKQYLARVSQVRQEEPLAENKSSLHTLSSNVMESDLSLLARREPLFLER
DPRVESRVQPSAASMYSQDPVLAATLARVSAAFVTQVSQTMQIPFSYAEDIIGLEGANIA
YIRRSSGATVTIQESPHPDEITVEIKGTSSQVQTAQLLIQEFISNHKEPVSVSGGYARVD
TGYVPAVYPPQLSNRQEPLTSTYTGTETVQYRPTSYSQLPGQSTYTPTLTGQTYDTEYRP
ASDVNGYSSYSL
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgtcgcagattccgtggataacggcgcaacaatcttccctgagaatcaaact
cccataccctccggagtcactgccacaacattgcttaacgaaaactctgatgccttccct
gaattgaatcaaccggatagctcagctgctgcggagagatggccaggttggcctggggat
tctgctgcggagagatggccaggttggcctggggattgcgtgtttcgagtgatcgtcccc
atagctaaagtcggagctatcatcggacgcaaaggagatatcatcagaaagatgtgcgag
gagactcgcgctcgcatcaaagtcctcgacggtcccgccacgactcaagatcgcgtcgtg
ctaatatctgcgaaggaagatctagaggcatacatgtcgcctgcaatggaagcagtcgtg
agggtgttcagacgagtttcagaattgcctgataacgatgacgatgatgatgttcaaaaa
gctggaagtgccgtctcttcagtgcgtttattagttgcgtctatgcaggcgataagtttg
atagggaaacaaggatcctccattaaagcaatagtagagaactctggtgcatcagttcgc
atattatcagaagaggaaacaccgttctatgctgggcaagatgagaggatagtggatgtg
cagggggaagctttaaagattgcaaaagcgttagaagcgattgttggccacctaaggaag
tttctagtcgaccattctgtggttcctctcttcgagaagcaatacttagctagagtctct
caagttcgccaggaagaacccttagctgaaaacaagtcatctctccatactctttcgtca
aatgtgatggagtctgatctctccctcttagcacgaagggagcctctgtttttggagcgt
gatcctcgggtggagtcacgtgttcaaccttcagcagcttctatgtacagtcaagatcct
gtactcgccgccacccttgctcgtgtttccgctgcttttgttacacaggtatctcaaaca
atgcaaataccgttctcctatgcggaggatattattggtttggaaggagctaatatagcc
tacatccgccggagtagcggagctaccgtaaccattcaagagagtccacatcctgatgaa
atcacagtggaaatcaaaggcacctcttctcaagtacaaactgctcagctgctaattcaa
gagttcatcagcaatcacaaggaaccggtttcggtttcagggggatatgctagagtcgac
actggctatgtacctgctgtatatcctcctcagctgagcaaccgtcaagagccgctcacg
agtacctacacgggcacagagactgtgcagtacagaccaacatcatactctcaactgcct
ggtcagtcaacctacacgccgactctgactgggcaaacttacgatacggaatatagacca
gcttctgatgttaatggttacagcagttacagtttatga
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