Brassica napus (rape): 106429646
Help
Entry
106429646 CDS
T04128
Name
(RefSeq) protein SUPPRESSOR OF PHYA-105 1
KO
K16240
protein suppressor of PHYA-105 1 and protein SPA1-related 2
Organism
bna
Brassica napus (rape)
Pathway
bna04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
106429646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bna04121
]
106429646
Ubiquitin system [BR:
bna04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Multi subunit type E3 associated proteins
106429646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_C
EIF3I
Beta-prop_RIG_2nd
Pkinase
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_CAF1B_HIR1
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_NUP159_NUP214
WD40_RFWD3
PK_Tyr_Ser-Thr
WD40_like
Spore_III_AB
CEP76_C
LemA
Motif
Other DBs
NCBI-GeneID:
106429646
NCBI-ProteinID:
XP_013725849
UniProt:
A0A816I1S0
LinkDB
All DBs
Position
C3:complement(15918518..15923032)
Genome browser
AA seq
934 aa
AA seq
DB search
MDDVPCKLEAGNDCRGSSSHMKNVVDDINKPPPPVEESVGASSKICVEELRLVNNRVVQG
SNVDSSCSRSDKFEHVYNNLARGSPPAFRVGDGDLHSQMLSRIRQQLAGSSSERLDYINR
RRSHQNLEAFSQRLRAAGDNIINMNAPALSSSSFSQVILKSAMKGENQETPPDFVSDQDC
KEIKLDNSNSPIPGYSSHKGHGDGNSLREFLISSYGKRERRHGLSLFTQLVELVDSSHSQ
GLFLMDLRPSLFALVPSKKLRYTGTFGKNNADEDLNTKRPWTQESSIVGRGVLKKRKTDL
HEPSPGNQLEAPSTGRPFERISPVIDLNVVDAYNQDSCELQQQNYGKSLGVASMTTRKQS
MSTWLEEQWYTCPEQINGEDSGEKSNIYALGVLLFELLCHCESSEMHAAMMADLRYRILP
PAILSKYPEEAGFCLWLLHPEPSSRPTAREILKSELISKNHDSAISTAADEEMSELLLHF
LSSLEKQKKKNATKLLQDIQTLEDDIKEAEQRYSSNASLVRSHGAMETRLQSSLMSNIHQ
LEDAYFFMRSQMKLSNSACHSDKSLLKDRDRWSENQNENQDTKTKGKSSDQVEVFFEGLC
KFARYSKFETCGTIRSGDLLNSTASVVCSLSFDAEEEHIAAAGISKKIKIFDFNAFMNES
VGVQYPLVEMVSKSKLSCVCWNSYIKNYLASTDYDGVVQIWDAGTGQGFSQYTEHQKRAW
SVDFSPSDPTKFVSGSDDCSVKLWSVNEKRSLGTIWSPANVCCVQFSAYSNHLLAFGSAD
YKVYCYDLRYVKTPWCTLAGHEKTVSYVKFMDSETIVSASTDNSLKLWNLNKTGLSPGAC
PLTYKGHTNQKNFAGLSVLDGYIACGSETNEVYSYYKSLPMPMTSYKFGSVDPISGNECF
DDNGQFVSSVCWRKKSNMLVAANSTGNMTLLKLV
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgttccttgtaagctcgaagctgggaacgattgtagaggaagctcatctcac
atgaagaatgttgttgatgatatcaacaagcctccgcctccggtggaagaatctgtagga
gcttcttctaagatctgtgttgaagagctcagattggtgaataatagggtagtccaaggg
agtaatgtagatagttcttgttctaggtctgacaagtttgagcatgtatataataatctt
gctagaggctctcctcctgcgtttagggtaggagatggagatcttcattctcaaatgctg
tcgagaatcagacaacagcttgcgggatcttcttctgaaaggctagactatatcaatagg
aggaggagccatcagaatcttgaagcgttttctcaacgtcttagagcagctggagataac
atcattaatatgaacgcacctgcattgagttcttccagtttctctcaggtgatacttaaa
agtgctatgaagggggaaaaccaagaaactcctcctgactttgtctctgaccaagattgc
aaggaaataaagttggataatagcaattcgcctatcccaggatattcaagtcacaaagga
catggtgatggaaacagtttgagggagtttcttatatcaagttatggtaaacgagagaga
cgacatggcctttctctatttacgcagctggtggagctggttgactcatcccattctcaa
ggactattcttgatggacttgagaccctcccttttcgctttggttccttcaaagaaactt
aggtatactggtacgttcggaaagaacaatgctgacgaagatttgaatacgaagaggccg
tggactcaggaatcatctattgtgggtaggggggttttgaagaaaagaaaaacggacttg
catgagccttctccagggaatcaacttgaggctccttccactgggagacctttcgaaagg
atcagccctgtgattgatttaaacgtggttgatgcatataatcaagacagttgtgaactt
caacagcaaaactatgggaaaagtttaggagtggcatcgatgacgacgagaaaacagtct
atgtccacatggctcgaagagcaatggtatacttgtccagagcagataaatggagaagat
tccggagaaaaatcaaatatatatgcccttggtgttcttctgtttgagttgctatgtcat
tgcgagtccagtgagatgcatgctgcaatgatggcagatttacgttatcggattctccca
ccagcaattctctcaaaatatcctgaggaagctggattttgtctttggctactacatccg
gaaccctcctcgagaccaacagctagagaaatactaaagtctgagttgatatccaagaat
catgattcggcgatatcgactgctgctgatgaggagatgtctgagctgttacttcatttt
ttgtcttcgctagaaaagcagaagaagaaaaatgcaactaagcttttgcaagacatccag
accttggaggatgatattaaggaagccgagcaaagatattcttcaaatgcatctctggtg
agatctcatggagctatggaaacaagactgcaatcatctctgatgagtaatatccatcaa
ctcgaagatgcatatttcttcatgagatcacaaatgaagttatccaattccgcctgccat
tctgacaaaagccttctaaaggacagggacaggtggtctgaaaaccaaaatgagaatcag
gatacgaaaaccaaaggaaaatcttcagatcaagtggaagtgtttttcgaggggctgtgc
aaatttgctcggtatagcaagtttgaaacctgtgggacaataaggagtggagatctttta
aactctactgctagtgtggtatgctcattgagttttgacgctgaagaggaacacatagca
gccgctgggatatcaaagaaaatcaagatttttgacttcaatgcgtttatgaatgaatct
gtcggtgttcaatatccactagttgagatggtcagcaaatccaaattaagctgtgtttgc
tggaatagttacataaaaaactacttagcctcgactgactacgatggtgtagttcagata
tgggatgcagggactggacaaggattctcgcagtatacagaacatcagaagagagcctgg
tcagttgatttttctccatctgacccgacaaaatttgtcagtggaagtgatgactgttcg
gtaaagctttggagcgtcaatgagaaacgttcattaggcacaatctggagtccagctaac
gtgtgttgcgtgcaattctctgcatattccaatcacttattggcatttgggtcagctgat
tacaaggtctattgctatgatcttcggtacgtcaaaactccttggtgcacattggctggc
catgagaaaactgttagctatgttaaatttatggactcggaaaccattgtctctgcttcc
actgataactctctcaagctttggaaccttaacaagactggtttatctcctggtgcttgt
ccattgacgtataaaggacatacaaatcaaaagaattttgctggattatcagttttggat
ggatacatagcatgtggttcagagaccaatgaggtatatagttattataaatccttaccg
atgccaatgacttcatacaagtttggatctgtggatcccatttctggaaacgagtgcttc
gatgacaatgggcagtttgtgtcgagcgtctgttggagaaaaaaatcgaatatgcttgta
gctgcaaattctactggaaacatgacgctactaaaactggtttga
DBGET
integrated database retrieval system
