KEGG   Brassica napus (rape): 106430228
Entry
106430228         CDS       T04128                                 
Name
(RefSeq) HBS1-like protein
  KO
K14416  elongation factor 1 alpha-like protein
Organism
bna  Brassica napus (rape)
Pathway
bna03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    106430228
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bna03019]
    106430228
Messenger RNA biogenesis [BR:bna03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     106430228
SSDB
Motif
Pfam: GTP_EFTU GTP-eEF1A_C GTP_EFTU_D3 GTP_EFTU_D2 MMR_HSR1 GTP_EFTU_D4 Zn_ribbon_RanBP RUBY_RBDX
Other DBs
NCBI-GeneID: 106430228
NCBI-ProteinID: XP_013726451
LinkDB
Position
A3:1778249..1781691
AA seq 628 aa
MPRKGFSNFDDYDDGFDDDYDYDYDDDDEHEESEQKEVEIAQQGVWRCGICTYDNDESMN
VCDICGAIRHDTVAGGNQTIINNNTASMKQKERQDTSVHNPLKKERDRSETSSQGRHAHI
GGVKSSKSVPKAKADSSHETTSSSKNMEASESLTSTMNKMSLTGEAETSRDIKSRSARSK
SNHKPEEWMLLDKESDILTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKFEKEAK
LQGKGSFAYAWALDESAEERERGITMTVAVAYFNTKRHHVVLLDSPGHKDFVPNMIAGAT
QADAAILVVDASIGAFEAGFDNLKGQTREHARVLRGFGVEQVIVAVNKMDIVGYSKDRFD
LIRQHVGSFLQSCRFKESSLTWVPLSAMENQNLVSAPSESRLSSWYQGPCLLDAVDSVNS
PGRDVSKPLLMPICDVVRSNSHGQVSACGKLEAGAVRSGSKIMVMPSGEQGTVRSLERDS
QGCTIARAGDNVAIALQGIDANQVMAGGVLCHPDYPVSVATHLELMVLVLEGATPILLGS
QLEFHVHHAKEAATVVKLVAMLDPKTGEPTKKSPRCLTAKQSAMLEVSLHYPVCVETFSE
SRALGRVFLRSSGRTVAMGKVTRIIQDS
NT seq 1887 nt   +upstreamnt  +downstreamnt
atgcctcgtaaaggattctccaatttcgatgattatgatgatggtttcgacgatgattat
gactatgactatgatgatgatgatgaacatgaagaatctgaacagaaggaagtagaaata
gctcagcaaggggtttggagatgtggaatctgtacatatgacaatgatgagagtatgaat
gtgtgtgatatctgcggtgctattcgtcatgatacagtggctggtggaaaccaaactatc
attaacaacaatacagcaagcatgaagcagaaagagaggcaagatacgtcagtacataac
cctctaaagaaagaaagagatagatcagaaactagctcccaaggcagacacgctcatatt
ggcggcgtaaaatctagcaaaagtgtgccaaaagcaaaagcagattcgtctcatgagaca
acttcttcctcaaaaaatatggaggcgtcagagagtcttactagtactatgaacaagatg
tctttgactggggaagcagaaacctccagagatattaaaagtagaagcgcaagatcaaaa
tcaaaccataagccagaggagtggatgcttcttgataaagaatcagatatactaactcaa
cttaatctcgccatcgttggacatgttgattcaggcaaatcaacgctttcaggtagacta
ctgcatctactaggaagaatctctcaaaagcaaatgcacaagtttgagaaagaagcaaag
ctgcagggcaaggggtcctttgcatatgcctgggcattggacgagagtgctgaagagagg
gaaagagggatcacaatgacagtggcggttgcttacttcaacaccaaacgacaccatgtt
gttttgctagactctcctggacacaaagactttgttcccaacatgatagcaggagcaacg
caagcagatgcggcgattctcgtcgtggatgcatccatcggtgcttttgaagctggtttt
gataatttgaaaggacagacgagggagcatgcgcgtgttcttagaggctttggcgtggag
caagtcatagtcgcagttaacaaaatggatattgttgggtattccaaggacaggtttgat
ttgattaggcagcatgttggatcttttcttcagtcgtgtcggtttaaagagtcgtctctg
acgtgggttcctttaagtgccatggagaaccaaaatttggtttctgctccctctgaaagc
cgcctatcctcatggtaccaaggtccatgtttattggatgcagttgactctgttaactct
cctggtagagacgtctcaaagcctctgctaatgcctatatgtgacgttgtgagatcaaac
tcacatgggcaggtatctgcatgtggcaaacttgaagctggagctgttcggtcaggatcc
aagataatggttatgccatcaggagagcaaggaaccgtgcggtctctggagcgtgactct
cagggttgcaccatcgcgagagctggagataacgtagctatagctttgcaagggatcgat
gcaaatcaagtgatggcaggaggtgtgctgtgccatcctgattacccggtttcagtagca
actcatttggagttgatggtgctcgtcttggaaggtgcaacaccgatcttgctcggttct
cagttggagtttcatgtgcaccatgcaaaggaagcagcaacagttgtgaagcttgtggca
atgcttgatccgaaaacaggggagccgacaaagaagtctcctcgttgtctaactgctaaa
caaagtgcaatgcttgaggtgagtcttcattatccagtttgtgtggagacattttctgaa
agtagagctcttgggagagtgttccttagatcatcaggaagaacagtcgcaatgggcaaa
gtaactcggatcatccaagactcttaa

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