Brassica napus (rape): 106430295
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Entry
106430295 CDS
T04128
Name
(RefSeq) probable pectate lyase 10
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106430295
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106430295
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106430295
NCBI-ProteinID:
XP_013726537
UniProt:
A0A816M6D6
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Position
C7:15581418..15586027
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AA seq
439 aa
AA seq
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MAVSRSLLALSASLLVLAFFLCVNASTRAHETEELKSQSLTNSSTADKLSDGAWNEHAVE
NPEEVAALVDMTIRNSTERRKLGFFSCATGNPIDDCWRCDRNWHLRRKRLANCAIGFGRN
AVGGRDGRYYVVTDPSDNDAINPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFK
TIDGRGANVAIAGGACITIQYVTNIIIHGINIHDCRRTGNAMVRSSPSHYGWRTMADGDA
ISIFGSSQIWIDHNSLSNCADGLIDAIMGSTAITISNNYLTHHNEVMLMGHSDSYTRDKV
MQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRFLAPA
NPFAKEVTKRVGSWQGEWKQWNWRSQGDLMLNGAYFTRSGAATPASYARASSLGAKPSSV
VSMLTYSSGALKCRIGMRC
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcggtctcgagaagtctcttagctctctcagcaagtttacttgttcttgcattcttt
ctctgtgtaaatgcatcgacaagagctcacgaaacagaggagcttaagtctcagagcctg
actaattcatcaacggctgataagttaagtgacggtgcatggaatgaacacgccgttgaa
aacccagaagaagtagctgcgttggtcgatatgacgataaggaacagcacggagcggagg
aagctaggattcttctcatgcgccaccggaaacccaatcgacgattgctggcgatgtgat
cggaactggcacctccgtcgcaagcgtctcgccaactgcgccatcggtttcggccgcaac
gccgtcggaggacgcgacggtcgttactacgtcgtcacagatccatcggacaacgacgcg
attaacccgagaccgggaacgctccgtcacgccgtgatccaggaccgtccgttatggatc
gtattcaaacgcgacatggtgatcaccctgaaacaggagctgatcatgaacagcttcaag
accatcgacggaagaggcgcgaacgtcgcgatcgcgggaggcgcgtgtatcacgatccag
tatgtgacgaacatcatcatccatgggattaacatccatgattgtagacggacgggtaac
gctatggtgagaagctctccgtcgcattacgggtggaggacgatggcggacggtgacgcg
atttcgatattcgggtcgagtcaaatttggattgatcataattctttgtctaattgtgct
gatgggttgattgatgcgattatgggatctacagccattaccatctccaataactatctc
actcatcacaacgaggttatgttgatgggacacagtgattcatacacaagagacaaggtg
atgcaagtgacaatagcatacaatcattttggagaggggcttatacagagaatgccaagg
tgtaggcacggttatttccatgttgtaaacaatgattacacacactgggtaatgtatgcg
attggtggaagtgctaacccaaccatcaacagccaaggcaatcggttccttgccccagca
aacccttttgccaaagaggtgacaaagagggtaggttcatggcaaggagaatggaagcaa
tggaactggagatcgcagggagacttaatgctcaatggtgcttacttcactagatctgga
gctgctactcctgcaagctatgccagagcttctagcttgggagctaaaccatcttccgtt
gtaagtatgcttacctacagttctggtgccctcaaatgcaggattggtatgcggtgttag
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