Brassica napus (rape): 106431788
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Entry
106431788 CDS
T04128
Name
(RefSeq) paired amphipathic helix protein Sin3-like 2 isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bna03036
]
106431788
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
106431788
REST complex
106431788
Heterochromatin formation proteins
Other heterochromatin formation proteins
106431788
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAH
Sin3a_C
Sin3_corepress
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
106431788
NCBI-ProteinID:
XP_013728067
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All DBs
Position
A3:complement(2724486..2731385)
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AA seq
1350 aa
AA seq
DB search
MKRIRDDVYSSGSQFKRPLPSSRGESYVQSPVPGDGGVSSQKLTTDDALSYLKDVKEMFQ
DQRDKYDMFLEVMKDFKAQRTDTSGVIARVKELFKGHNNLIFGFNTFLPKGFEITLDEVE
EEAPPKKTVEFEEAISFVNKIKKRFQSDEGVYKSFLEILNMYRKDDKDITEVYNEVSALF
EDHLDLLEEFTRFLPESLAAHSAAQLIRSQAQRYHDRGSGPPLVRRMLMEKDRRRERAVA
SRGDRDHSVDRSDHNDDKAMVKMHREPKKRVDKENRERRSRDLDDGEAEQDNLHHFSEKR
KSSRRTEGFEAYSGPASHSEKNNLKSMYNQAFVFCEKVKERLCSQDDYQTFLKCLNIFSN
GIIQRKELQNLVSDLLGKFPDLMDEFNQFFERCESNDGFQHLAGVMSKKSLSSEEHLSMP
VKGEEKETETEREHKRDLDAAKEKERSNDKYMGKSIQELDLSDCERCTPSYRLLPSDYPI
PSVRHRQKLGAAVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVG
SAAKSAEELLNNIVEKKISIEGSFRVEDHFTALNLRCIERLYGDHGLDVTDLIRKNPAAA
LPVILTRLKQKQEEWTKCREDFNAVWADVYAKNHYKSLDHRSFYFKQQDSKNLSAKALVT
EIKDLKEKSQEEDDVLLSVAAGHRQPIIPHFEYEYLDRTIHEDLFKLVQFSCEEICSTKE
QIGKVLRLWKSFLEMMLGVPPRAKGSNSVEDAVETKHHGALTSGDVNVSSDSTNLVLRQL
NFAANGDEYASSGVSKHGAIGLLKRDSSAKENCKDGDPANKDGATCSSVKPQKDQENGNG
TDKRSGDVDDRVATFLSGVENNNGKVGSGDSSGSRGILSKSGDAIENTDTIVIANGVLPD
ASKANSNYDEPGGPSNIEKEEGELSPIADSEDNFVVYEDRGLKSTAKPEHSVEAEGENDD
DADDEDGDGDGDDASEGGEDASGTESIGDECSQDGNGMEEEGEHDEIDGKAESEGEAEGM
DSHLIEEDNRLLPLSERVLLSVKPLSKHVAAAALLDERQKDSRVFYGNDDFYVLFRLHRV
LYERILSAKTYCTGSELNRRNTKDTSSPDPYARFMSALFSLLNGSAESSKFEDECRAIIG
NQSYVLFTLEKLIYKLVKQLQAVVADDMDNKLLQLYEYEKSRKPGRVIDSVYYENARILL
HEENIYRLECSSSPSRLSIQLMDSIVEKPEAYAVSLDPTFSSYLQKEFLSNSSGKKVVPQ
AIVLKRNMRGYSGLDDLAVACKAMEGVEVINGLECKMSCSSYKISYVLDTEDFFHRKKKK
QKKPSHEKSSSEQRKSYRVERFHKFLSASR
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggattagagatgacgtgtactcctccgggtctcaattcaaacgtcctttgccc
tcttctcgtggcgaatcatatgtgcaatctccagtccctggtgatgggggagtgagctct
cagaagttgacaacggatgatgctttgtcttacttgaaggatgtcaaggagatgtttcaa
gatcaacgggacaagtatgatatgtttcttgaggttatgaaagactttaaagcacaaagg
acggatacatctggtgtgattgcacgagtcaaggagttgtttaaaggccataacaatttg
attttcgggtttaacacctttctgcctaaggggtttgaaataacgcttgatgaagtagaa
gaagaagctccacctaagaaaactgttgaatttgaagaggctatatcttttgttaataaa
attaagaaacggttccagagcgatgaaggtgtctataagtctttcttggagatcttaaat
atgtatcggaaggatgataaggacatcactgaggtttacaatgaggtatcggctcttttt
gaggaccacctggatttgcttgaagagtttactaggtttctgccagagtctttggcggct
cattcagcagctcagttaatccggagtcaggcccaacggtatcatgaccgaggatcaggt
cctcctcttgtgcgtcgaatgttaatggagaaggatcgccgacgagaaagggctgttgct
tctcggggtgaccgtgatcatagtgttgaccgttctgaccataatgatgataaagcaatg
gttaagatgcacagagagccgaagaaacgagtcgataaggagaatagagaaaggagaagc
cgtgatttggacgatggagaagcagagcaagataacttgcaccatttctcagagaaaagg
aagtcctccagaagaactgagggctttgaagcttattccggtcctgcttcacattctgag
aaaaacaatctaaaaagcatgtacaaccaagcatttgtgttttgtgagaaagtcaaggag
agactatgcagccaagatgattatcagacattcttgaagtgtctcaatattttcagcaat
ggaattatccaaaggaaagagctgcagaatttggtttctgatctgcttggaaaattccct
gatctcatggatgagtttaatcagttctttgagcgttgtgagagtaatgatggtttccag
cacctcgctggcgttatgagcaaaaaatcactaagcagtgaagaacatttatcaatgcca
gtgaagggggaggaaaaggaaacggaaacggaaagagaacacaaacgcgaccttgatgct
gctaaggaaaaggagcgttccaacgacaagtacatggggaaatctattcaagagcttgat
ctatctgattgcgagcggtgcactcctagctaccgactcctcccatcggattatccaata
ccttccgtccgccacagacagaaattaggggctgctgttttaaatgatcactgggtttct
gtcacttcaggaagtgaagactactcttttaagcacatgcgcagaaaccaatatgaagaa
agtttgtttagatgtgaagatgacagatttgagttggatatgctgttggaatctgtgggt
tctgctgcgaaaagcgcagaagagttgttgaataatatagttgagaagaaaataagtata
gagggatccttccgggttgaagaccacttcacagccctaaatttaaggtgcatagagaga
ctctatggcgaccacggtcttgacgtgacagacctaatacgtaagaatccagccgctgca
cttcctgtaattcttactcgtttgaagcagaaacaagaagaatggacaaagtgccgtgaa
gattttaatgcggtctgggcggatgtgtatgcgaagaatcattacaagtcacttgatcac
cgcagcttctattttaagcagcaagattctaagaacttgagtgccaaagcgctggtgact
gaaatcaaggacctgaaagagaagtctcaggaagaagatgatgttcttctgtctgtagct
gctggtcacagacaacccataattcctcacttcgagtatgaatatttggacaggactatt
catgaagatctattcaaactagtacaattttcgtgtgaggagatatgttctacaaaggag
cagatcggtaaagttttgaggctctggaaaagttttctggagatgatgcttggtgttcct
cccagggccaaggggtcaaattctgttgaagatgcagtagaaaccaagcatcacggtgca
ttgacgagtggggatgttaatgtgagctctgactcgacaaatttggttttgaggcaacta
aactttgctgccaatggagatgagtatgcttcatctggggtctccaaacatggcgcgatt
ggtctgttaaagagggattcttcagcgaaagaaaattgcaaggatggtgatcctgctaat
aaagatggtgccacctgttcttctgttaaacctcagaaagatcaagaaaatggaaatgga
accgataaacgatctggagatgttgatgatagagtagccacattcctaagtggggtagaa
aacaacaatggtaaagtagggagtggagattcgtcaggttcacgtggcattttatccaaa
tcaggtgacgctatagagaacactgacaccatagttatagcaaatggagtgctgccagat
gcttctaaagccaacagtaattatgatgaacctggtggtccatccaatattgagaaggag
gaaggtgaattgtcacctattgctgattctgaagacaactttgttgtttatgaagatcgt
ggtttgaagtctactgccaagccagaacattccgttgaagctgaaggagaaaatgatgat
gatgctgacgatgaagatggtgatggtgatggtgatgatgcttcagaaggtggtgaggac
gcgtccggaactgaatctattggtgacgaatgttcacaagacggtaatggtatggaggaa
gaaggtgagcatgatgagattgatggtaaagctgagagtgaaggagaggcagaggggatg
gattcgcatcttatagaagaggacaatcggttgcttccattgtcagaacgtgttctatta
tccgttaagcctctttcaaagcatgtagctgcagcagcgttgcttgatgagagacaaaaa
gattccagagtgttctacgggaatgacgacttttatgttcttttcaggcttcatcgagtc
ctgtacgagagaattttgtctgcaaaaacatattgcacaggcagtgaactgaatcggaga
aacacgaaagatactagttcaccagatccttatgcaaggtttatgagtgctttgtttagt
ctgcttaatggctcagctgaaagttccaagtttgaggatgaatgtcgagctattattgga
aaccaatcatatgttttattcacgttggaaaaactgatatacaaattggttaaacagctt
caagctgttgtagcggacgatatggataataagcttcttcagttgtacgagtatgagaaa
tctcggaaacctgggagggtcattgactcggtgtattatgaaaacgcgaggattctcctt
cacgaggaaaatatttatcggttggaatgttcgtcctccccatcccgtttgtcaatccag
cttatggatagtatagtcgaaaagccggaggcttatgcagtctccctggatcccacgttt
tcaagttatctgcaaaaggagttcctttccaactcatcagggaaaaaagtagtcccacag
gccattgtgttaaaaaggaacatgcgtggatactctggtctggatgatcttgcagtagcc
tgcaaggcaatggaaggagtagaagtaattaatggccttgaatgcaagatgtcttgctct
tcctacaagatttcgtatgttttggacacggaggatttcttccataggaagaagaagaag
cagaagaagccgtcacatgaaaaatcatcatcggagcaacgcaagtcgtacagagtagaa
agattccacaagtttctctcagcttcaagatga
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