Brassica napus (rape): 106432135
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Entry
106432135 CDS
T04128
Name
(RefSeq) DNA-directed RNA polymerase II subunit 2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
bna
Brassica napus (rape)
Pathway
bna03020
RNA polymerase
bna03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106432135
09124 Replication and repair
03420 Nucleotide excision repair
106432135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106432135
03400 DNA repair and recombination proteins [BR:
bna03400
]
106432135
Enzymes [BR:
bna01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
106432135
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
106432135
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
106432135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
106432135
NCBI-ProteinID:
XP_048607367
LinkDB
All DBs
Position
C3:65045419..65051668
Genome browser
AA seq
1249 aa
AA seq
DB search
MDYKQNQTYIDADGKITQENNNKEITQEEDDEEITQEDAWTVISAYFEEKGLVRQQLDSF
DEFIQNTMQEIVDESSDIEIRPESQHNPGHQFDFAERIYKISFGQIYVSKPTITESDGET
ATLFPKAARLRNLTYSAPLYVDVCKTVIMKGHDGEEVTETQDFTKVFIGKVPIMLRSTYC
TLHQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYSYVAE
VRSMAETQNRPPSTMFVRMLSGSKGGSSGQYIRCTLPYIKKEIPIIIVFRALGFVADKDI
LERICYEFGDTQMMELLRPSLEEAFVIQSQQVALDYIGKRGAPVGTPKDKRIKYARDILQ
KEMFPHVGVGAFETPKAYYFGYVFSSLVFFEFHSAFCFSYYAITLRLIIHRLLRCALGRN
PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTI
TSGLKYALATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
HNSQWGMMCPAETPEGQACGLVKNLALMVYVTVGSAAYPILVFLEEWGLENLEEISPADI
PQATKIFVNGKWVGIHRIPDMLVRTLRLLRRRNDINTEVSVVRDIRLKELRIYTDYGRCS
RPLFIVDNQRLLIKKKDIYALQQRVKFIVFRSQSTFCGNFSVPILVFITQESAEEDGWHH
LLAKGFVEYVDTQEEETTMISMTINDLVQARLRPDEAYSDTYTHCEIHPSLILGVCASII
PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ
LPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLIKEDFGR
PERGNTLGMRHGSYEKLDDDGLAPPGTRVSGEDVIIGKTTAISQDEAQGQTSRYTRRDHS
ISLRHSESGMVDQVLLTTNADGLKFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED
MPWTIEGVTPDIIVNPHAIPSRMTIGQLIECVMGKVAAQMGKEGDATPFTDVTVDNISKA
LHKCGYQMRGFERMYNGHTGRPLPAMIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP
AEGRSRDGGLRFGEMERDCMIAHGAASFLKERLFDQSDAYRVHVCETCGLIAIANLKNNT
FECRGCKNTTDIVQVHIPYACKLLFQELMSMAIAPRMLTKDVKSAKGRK
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atggactacaaacagaaccaaacttacattgatgccgacggcaagattacacaggagaac
aacaataaggagattacacaagaggaggacgacgaggagattacacaggaggacgcatgg
accgtcatctcagcctacttcgaagagaaaggtctcgttcgtcagcagctcgattctttc
gatgagtttattcagaacactatgcaagaaatcgtcgacgagtcgtccgatatcgagatc
cgacccgagtcccagcacaatcctggccaccaatttgatttcgccgagagaatctacaag
attagttttggacagatttatgtgagtaaacccacgataacggagtctgatggagagact
gccaccttgttccccaaggctgcaaggttgagaaacctcacctactcggctcctttgtat
gtcgacgtttgcaagacagttattatgaaagggcatgatggggaggaagttacggagact
caggattttaccaaagttttcattggaaaggttcccatcatgctccggtctacttactgt
accttgcatcagaattcggagaaagatttgacagagcttggagaatgtccttatgatcag
ggaggatacttcattattaatggcagtgaaaaggttctgattgctcaagagaagatgagt
acgaaccatgtttatgtgttcaagaagagacagccgaataagtactcgtatgtcgctgaa
gtccgttccatggcggaaacccaaaatagacctccgagcacaatgtttgtgcgtatgctc
tctggctcgaaagggggttcatctggacagtatattcgatgtactcttccatatatcaag
aaagaaattcctattatcatagtatttcgtgcattggggtttgttgccgataaggacata
ttggagcgtatatgctatgagtttggagatactcagatgatggagttgctcaggccttcc
ttggaagaagcttttgtgattcaaagtcagcaggttgcccttgactatattggaaaacgt
ggtgcgcctgttggtacacccaaggacaagaggataaagtatgcaagagatatccttcag
aaagaaatgtttcctcatgtaggagttggggcttttgagactccaaaagcttactacttc
gggtacgtattcagctcactcgtgttctttgagtttcatagtgctttttgtttctcatat
tatgcaataaccctcaggcttatcatacaccggctgctgcgttgtgcacttggccgaaat
ccagaagatgatagggatcattatggtaacaaaaggctggatcttgctggtcctttactt
ggagggctgtttagaatgcttttcagaaagctaacgagggacgtgagatcttatgttcag
aagtgcgttgacaatggcaaagaagtaaatcttcaatttgccattaaggctaaaacaatt
acctctggcttgaaatatgctcttgctactgggaactggggccaggcaaacgctgctggc
acaagagctggagtctctcaggttctaaatcggttaacatatgcctccactttgtcacat
ctgaggcgtctcaattctcctattgggcgtgaaggaaaattggcaaaaccaagacaacta
cacaactcacaatggggtatgatgtgccctgctgaaacacctgaaggacaggcttgtggt
ctagtgaaaaacttggcgctcatggtctatgtgacagttgggtcagctgcttatcccata
ttggtatttttggaagaatggggacttgagaatcttgaggaaatatccccagcagatata
ccccaagccacaaaaatctttgtcaatggaaagtgggttggaattcatcgaattcctgac
atgttggttagaacgttgagacttttgaggagaaggaatgatattaacactgaagttagc
gttgttagagatattcgtctgaaagagctccggatatacactgactatggtcgctgtagt
cgtcccttgtttattgtggataatcagaggctcttaataaagaagaaagatatatatgct
ctgcaacaaagggtaaagtttatagtctttcgttctcaaagtacgttttgtggtaacttc
agtgtaccaatactcgttttcataacccaggaaagtgcagaagaggatggttggcatcat
ctacttgcaaaggggtttgtagaatatgtagacacacaggaagaggagactactatgata
tccatgactatcaatgatctggttcaagctaggctccgtcccgacgaggcatattctgac
acttacacacattgtgagattcacccttctttgatattgggcgtgtgtgcttcaatcata
ccgtttcccgaccataatcagtcaccccgtaatacataccaatctgctatgggaaagcaa
gctatgggaatatatgtcaccaactaccaattccgcatggataccttagcctatgttcta
tattaccctcaaaagcctctggtcaccacaagagctatggagcatcttcactttaggcaa
cttccagcaggaattaatgctattgttgccatttcttgctattctggatataatcaggaa
gattctgtcatcatgaatcagtcttcaatagatcgtggtttctttcgatccttgttcttc
cggtcttacagagacgaggagaaaaaaatggggacccttatcaaagaagactttgggcgc
ccagagagaggaaatacactgggtatgcgacatggttcttatgagaaactggatgatgat
ggtctcgcacctcctggtactagagtttcaggtgaagatgtaatcattgggaaaaccact
gcaatatcccaagacgaggctcaaggacaaacatcacgatacaccagacgtgatcacagt
ataagcttgcgtcatagtgaatctggcatggtggatcaggtgttattgaccacaaatgca
gatggtttgaagttcgtgaaagtgagggttaggtccgttcgtattcctcaaattggagac
aagttcagtagtagacatggtcagaagggaactgttggcatgacatacacacaggaggac
atgccttggacgattgaaggcgttactcctgatataatcgtgaatccacatgctatcccg
tctcggatgacaattggacagctgattgagtgtgtcatgggaaaagtggcagctcagatg
ggtaaagaaggagacgccactccctttacagatgtcacggtggacaatataagcaaagct
ctccataaatgtgggtaccaaatgcgtggatttgagagaatgtacaatggtcacacaggc
agaccactcccagcgatgatattcattggaccaacctattaccaaaggttgaagcatatg
gttgatgacaagatccactctcgtggacgaggtcctgtgcaaatcttaacaagacaaccg
gctgaaggacgatcccgtgacggtggactgcgttttggagaaatggagcgagattgcatg
attgcacatggtgctgctagctttttgaaagagaggctgtttgatcagagcgatgcgtat
agggtacatgtgtgtgaaacctgtgggctcatcgccattgcaaacctgaagaataatact
tttgaatgcagaggttgcaagaacacaacagatattgttcaggttcacataccatatgct
tgcaaattactgtttcaagagcttatgtcaatggcgattgcgccacggatgcttactaaa
gatgtgaagtcagctaagggcaggaagtga
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