Brassica napus (rape): 106432620
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Entry
106432620 CDS
T04128
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 2
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106432620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106432620
Enzymes [BR:
bna01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
106432620
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106432620
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106432620
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
FTP
Motif
Other DBs
NCBI-GeneID:
106432620
NCBI-ProteinID:
XP_013728923
UniProt:
A0ABQ8DG13
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Position
A4:1498601..1502918
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AA seq
600 aa
AA seq
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MLSVIRVHLPSEIPIVGCELTPYVLVRRPDKTAATDDVPESAPLDGYFLRYRWYRVQSDK
KVTICSVHPTEQATLQCVFCSKRRALVAKSYHCSPKCFTDAWQHHKTLHERAAAENGNEE
DELTRFNSTGSGVLASTLSGSMSNLTLANNGPTPFYPSSITQKNGGETLIEVGGSKTYTP
TADDIGYVLKFECVVANAETKQFVGHPSTILTSRVIPAPSPSPRRLIPVNGADVMGHLDQ
DGRIQSAGSFTVLSYNILSDTSASSDLYSYCPPWALSWPYRRQNLLREIVGYRADVVCLQ
EVQSDHFHEIFAPELDKHGYQALYKRKTNEVLSGSTSVIDGCATFFRRDRFSHVKKYDVE
FNKAAQSLTEAIIPHTQKRTALNRLVKDNIALIVVLEAKFGNQPTDPSGKRQLICVANTH
VNVQQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNTLPGSAPHTLLVMGKVDPLH
PDLMVDPLNILRPHTKLTHQLPLVSAYSSFVRSVMGLGLEQHRRRMDLNTNEPLFTNCTR
EFIGTHDYIFYTADTLMVESLLELLDEDGLRKDTALPSPEWSSNHIALLAEFRCMPRTRR
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgctaagcgtgatccgagtgcatctcccttccgagattcctattgtgggctgtgagtta
actccttacgtccttgttcgccgccctgataagaccgccgccactgacgatgtccctgag
tcagctcccctcgatggctacttcttgagatacagatggtatcgtgtacagagcgataag
aaagtaactatctgcagtgtgcatccaacggaacaagccaccttacaatgtgtattctgc
tcaaagcgtagagccctcgtcgcaaaaagctaccactgctcgcctaaatgcttcacagac
gcgtggcagcaccacaagactttacacgagcgagcagctgcagagaacggaaacgaggaa
gatgagctaactcggttcaacagcacaggctccggcgttctcgccagcaccttatccggc
tcaatgtcgaatctcaccctcgccaacaacggccccacgccgttctatccttcaagcatc
actcagaagaacggaggagagacgctgatcgaggtcgggggcagcaaaacgtacaccccg
accgctgatgacattggctacgtgttgaagttcgagtgtgtcgtggctaatgcagagact
aaacagtttgtgggacatcctagtacgattctgacttcgcgtgtgatccctgcgccttct
ccgagtccacgtaggcttatccctgttaatggagctgatgtgatgggtcacttggatcaa
gatggtcggattcagagtgcgggatcgttcactgttctttcttataatattttgtctgat
acttcggcaagtagcgacctttacagttactgtcctccttgggctctttcttggccgtac
agaagacagaatctgttgagggagattgttggttatcgtgctgatgtagtttgcctacaa
gaggtacaaagtgatcatttccatgaaattttcgcaccggagttggataaacatgggtat
caagctctctacaagagaaagactaatgaggttctcagtggaagtacgagtgtaattgac
ggatgtgcaacgtttttcagacgggatagattttcacatgtcaagaaatatgatgttgag
ttcaataaggctgctcagtctttgactgaggctataatccctcatacgcagaagagaact
gctttaaaccggcttgtgaaggataacattgcgttgatagttgttcttgaagcgaagttt
ggtaatcaacctactgatccctctgggaagcgccagcttatctgtgtggcaaacacacat
gttaatgttcaacaagaactaaaggacgtgaagctctggcaggttcatactttattaaag
gggctagagaaaatagctgctagtgctgatattcctatgcttgtatgtggagacttcaat
acacttcccggaagtgctcctcatacacttcttgtaatggggaaagttgatccactacat
ccagacttaatggttgatccccttaatatcctgcgtcctcatactaaactgactcatcag
ctacctttggtgagcgcttactcatcttttgtgagatcagtaatgggacttggattggaa
cagcacagaaggagaatggatcttaatacaaacgagcctttgtttactaattgtacaagg
gagttcattggcactcatgactatatattttatacagcggatactttgatggtggaatct
ttattggagttgctggatgaggatggattgaggaaggatacagctcttccttcacctgaa
tggtcttctaatcatattgcactcttggctgagtttcgatgcatgcctagaaccagacgc
taa
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