Brassica napus (rape): 106433210
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Entry
106433210 CDS
T04128
Name
(RefSeq) LOW QUALITY PROTEIN: probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106433210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106433210
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106433210
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106433210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
106433210
NCBI-ProteinID:
XP_022563916
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All DBs
Position
C8:complement(2519233..2523150)
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AA seq
649 aa
AA seq
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MYGLQLHSTSLFIVLCFLIHLLTFFSSFVSGQSTICKMSSSSNSTSSLTGSTSSAPDGSG
RTFTPFFPQFGSMSPVLNPDGTLKGVYDVEDHSFIPTSKATRGGPRNSVLGAPTLVNATS
SRAPPPPSSMGNTAGGGSMSRALISDGGSILSSTGSMGGGDSMSRALISDGGSILSSTGS
MGGGGSMSRALISDGGSILSSTGSMGGGGSMSRGLISDGGSILSSTGSMGGGGSMSRALI
SDGGSILSSTGSMGGGGSMSRGLISDGGSILSSTGSMGGGGLMSRALFSDGGSIMSSMGS
MDGSTEHYRSMMIGLQGSPQVYSMPGSAYPTAAGGHSQTYVQAMNSLSSMSLMNSIYTTT
DYQMDLHQQELMMQSQQSSMGRHGGFYFGDASMPTYPLQLPSAQAVSRSGVISSQTGGPP
TIGSRSVNAATGYDQPLQHHQNTSQFGGQKLPAIGQPIRDVGSQPTHATTQSTPDPFGML
GLVNVINQTNPDVTTLALGIDLQAMGLDMTSKENLFKTFASPWANEPLKEDQDHFDLPQC
YNAIQLPPPNQEMFRRFAMKTLFYIFYSMPKDEAQLYAANELNNRYWFYHKEHKCWFKRI
GKPLLQTNAYERGTYDCFDPDKFETVQKENIVIYYEMLERRPSLPQHRV
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgtatgggcttcagctgcactcaacttctctgtttatagttttgtgttttttgatccat
ctgcttacgttcttttcttccttcgtttcaggtcaatcaaccatttgcaaaatgtcaagt
tcttctaattcgacgtcatcactcaccggttctacttcgagtgcaccagacggttcaggg
agaacgttcactcctttctttcctcagtttgggtcgatgtctcctgttttaaaccctgat
ggaactcttaagggcgtttatgatgttgaagaccactcttttattcccacctcgaaggct
acccgtggtggaccgagaaactcagttttgggagctccaactttggtaaatgccaccagc
tctcgagcaccaccaccaccgagttccatggggaatacggctggtggaggctcaatgagc
agggccttgatctctgatggaggaagtatactgagctctacggggagtatgggtggtgga
gactcaatgagcagggctttgatctctgatggaggaagtatactgagctctacggggagt
atgggtggtggaggctcaatgagcagggctttgatctctgatggaggaagtatactgagc
tccacggggagtatgggtggtggaggctcaatgagcaggggattgatctctgatggagga
agtatactgagctctacggggagtatgggtggtggaggctcaatgagcagggctttgatc
tctgatggaggaagtatactgagctccacggggagtatgggtggtggaggctcaatgagc
aggggattgatctctgatggaggaagtatactgagctctacggggagtatgggtggtgga
ggcttaatgagcagggctttgttctctgatggaggaagtatcatgagctctatggggagt
atggatggaagtactgaacattatagatcaatgatgattgggctccaaggatccccacag
gtttattctatgcctggaagcgcctaccctactgctgctgggggacattcccaaacttat
gttcaagcaatgaacagcctaagctctatgagcttaatgaactccatctacaccacaact
gattatcaaatggatttgcatcagcaagaattaatgatgcaatctcaacagtcatctatg
ggaaggcatggtgggttttactttggtgatgcgtctatgccaacatatcctctacaacta
ccaagtgctcaagctgtgagccgtagtggtgttatctcctctcagactggtggacctccg
actattggatcaagatctgtgaatgctgcaacgggttatgaccagcccctccagcaccat
cagaacacgtcccagtttggcgggcagaagctaccagcgatcggccagcccatcagagac
gtgggatcacaaccaacgcacgcgacgacacagtccactcctgacccttttggcatgcta
ggtttggttaatgtgataaaccagaccaaccctgacgtgactactttggcacttgggatt
gacttgcaggcaatggggttagatatgacctccaaagaaaatcttttcaagactttcgcc
tcgccttgggctaatgaaccccttaaagaggatcaagatcacttcgatctaccgcagtgt
tacaacgcaatacaactaccacctccaaatcaagagatgtttagaaggtttgccatgaag
acattgttttacatattttatagcatgccgaaagatgaggcgcagctatacgcagctaat
gaacttaacaacaggtactggttctaccacaaagaacacaagtgttggttcaaacgaatt
gggaaacctctcctgcaaacaaatgcttatgaaagaggaacatatgactgtttcgatcca
gacaaatttgagaccgttcaaaaggaaaatattgttatttattatgagatgctggaaagg
aggccgtctctacctcaacaccgagtgtaa
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