KEGG   Brassica napus (rape): 106433210
Entry
106433210         CDS       T04128                                 
Name
(RefSeq) LOW QUALITY PROTEIN: probable NOT transcription complex subunit VIP2
  KO
K12605  CCR4-NOT transcription complex subunit 2
Organism
bna  Brassica napus (rape)
Pathway
bna03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106433210
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bna03019]
    106433210
Messenger RNA biogenesis [BR:bna03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     106433210
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     106433210
SSDB
Motif
Pfam: NOT2_3_5_C
Other DBs
NCBI-GeneID: 106433210
NCBI-ProteinID: XP_022563916
LinkDB
Position
C8:complement(2519233..2523150)
AA seq 649 aa
MYGLQLHSTSLFIVLCFLIHLLTFFSSFVSGQSTICKMSSSSNSTSSLTGSTSSAPDGSG
RTFTPFFPQFGSMSPVLNPDGTLKGVYDVEDHSFIPTSKATRGGPRNSVLGAPTLVNATS
SRAPPPPSSMGNTAGGGSMSRALISDGGSILSSTGSMGGGDSMSRALISDGGSILSSTGS
MGGGGSMSRALISDGGSILSSTGSMGGGGSMSRGLISDGGSILSSTGSMGGGGSMSRALI
SDGGSILSSTGSMGGGGSMSRGLISDGGSILSSTGSMGGGGLMSRALFSDGGSIMSSMGS
MDGSTEHYRSMMIGLQGSPQVYSMPGSAYPTAAGGHSQTYVQAMNSLSSMSLMNSIYTTT
DYQMDLHQQELMMQSQQSSMGRHGGFYFGDASMPTYPLQLPSAQAVSRSGVISSQTGGPP
TIGSRSVNAATGYDQPLQHHQNTSQFGGQKLPAIGQPIRDVGSQPTHATTQSTPDPFGML
GLVNVINQTNPDVTTLALGIDLQAMGLDMTSKENLFKTFASPWANEPLKEDQDHFDLPQC
YNAIQLPPPNQEMFRRFAMKTLFYIFYSMPKDEAQLYAANELNNRYWFYHKEHKCWFKRI
GKPLLQTNAYERGTYDCFDPDKFETVQKENIVIYYEMLERRPSLPQHRV
NT seq 1950 nt   +upstreamnt  +downstreamnt
atgtatgggcttcagctgcactcaacttctctgtttatagttttgtgttttttgatccat
ctgcttacgttcttttcttccttcgtttcaggtcaatcaaccatttgcaaaatgtcaagt
tcttctaattcgacgtcatcactcaccggttctacttcgagtgcaccagacggttcaggg
agaacgttcactcctttctttcctcagtttgggtcgatgtctcctgttttaaaccctgat
ggaactcttaagggcgtttatgatgttgaagaccactcttttattcccacctcgaaggct
acccgtggtggaccgagaaactcagttttgggagctccaactttggtaaatgccaccagc
tctcgagcaccaccaccaccgagttccatggggaatacggctggtggaggctcaatgagc
agggccttgatctctgatggaggaagtatactgagctctacggggagtatgggtggtgga
gactcaatgagcagggctttgatctctgatggaggaagtatactgagctctacggggagt
atgggtggtggaggctcaatgagcagggctttgatctctgatggaggaagtatactgagc
tccacggggagtatgggtggtggaggctcaatgagcaggggattgatctctgatggagga
agtatactgagctctacggggagtatgggtggtggaggctcaatgagcagggctttgatc
tctgatggaggaagtatactgagctccacggggagtatgggtggtggaggctcaatgagc
aggggattgatctctgatggaggaagtatactgagctctacggggagtatgggtggtgga
ggcttaatgagcagggctttgttctctgatggaggaagtatcatgagctctatggggagt
atggatggaagtactgaacattatagatcaatgatgattgggctccaaggatccccacag
gtttattctatgcctggaagcgcctaccctactgctgctgggggacattcccaaacttat
gttcaagcaatgaacagcctaagctctatgagcttaatgaactccatctacaccacaact
gattatcaaatggatttgcatcagcaagaattaatgatgcaatctcaacagtcatctatg
ggaaggcatggtgggttttactttggtgatgcgtctatgccaacatatcctctacaacta
ccaagtgctcaagctgtgagccgtagtggtgttatctcctctcagactggtggacctccg
actattggatcaagatctgtgaatgctgcaacgggttatgaccagcccctccagcaccat
cagaacacgtcccagtttggcgggcagaagctaccagcgatcggccagcccatcagagac
gtgggatcacaaccaacgcacgcgacgacacagtccactcctgacccttttggcatgcta
ggtttggttaatgtgataaaccagaccaaccctgacgtgactactttggcacttgggatt
gacttgcaggcaatggggttagatatgacctccaaagaaaatcttttcaagactttcgcc
tcgccttgggctaatgaaccccttaaagaggatcaagatcacttcgatctaccgcagtgt
tacaacgcaatacaactaccacctccaaatcaagagatgtttagaaggtttgccatgaag
acattgttttacatattttatagcatgccgaaagatgaggcgcagctatacgcagctaat
gaacttaacaacaggtactggttctaccacaaagaacacaagtgttggttcaaacgaatt
gggaaacctctcctgcaaacaaatgcttatgaaagaggaacatatgactgtttcgatcca
gacaaatttgagaccgttcaaaaggaaaatattgttatttattatgagatgctggaaagg
aggccgtctctacctcaacaccgagtgtaa

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