Brassica napus (rape): 106433726
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Entry
106433726 CDS
T04128
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106433726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106433726
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106433726
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106433726
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
106433726
NCBI-ProteinID:
XP_013730009
UniProt:
A0A078IMU2
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Position
A3:complement(3509394..3514698)
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AA seq
847 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKWNVYDTDNVNQKEKFEADLKKEIKKLQRY
RDQIKTWIQSSEIKDKKVSASYEQSLVDARKLIEREMERFKICEKETKTKAFSKEGLGQQ
PKTDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKSRPPRLTHLETSITRH
KDHIIKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFSDVDELYSTLPLDEV
EGLEDLVTAGPLVKGTPLSMKSSVAASASQVRSISLPTHHQSTSQEKTDDTTLPDSNSET
LPKTPPQKNGALHSAPSTPVGERPSLNVPVSSVPNAPVALSTSIPVQTSSESMGSLSPVA
AKEEDATTLPSRKPTSSVADAPPRGIGRVNIPTQPQLSQPLSPSPAKGARMSATSAAEVA
KRNIMGVESNVQPLTSPLSKMVLPPAVKGNDGTVSDSNPSDVAASIGRAYSPSIVSGSQW
RPGSPFQSQNETVRGRTEIVPDQRENYLQLYQQLQQGHGNLLGMASLSGGNEKQFSSQQQ
NPLLQQSSGISPHGGSGIQAPGFNVMSSASLQHSSNAMTQQFGQQPSGADVDHARNDDQL
QQNLPDDSTSMAASKTIPNEDDSKGLFDNPSGMPSYMLDQVQVTRDGPDFSPGQPIQPGQ
PSSSHGVIGRRSNSELGTIGEPSALGPMNDQMHNLQMLEAAFYRLPQPKDSERPRPYTPR
NPAITPQSFPQTQAPIVSNPLFWERLGSDAFGTEPLFFAFYYQQNSYQQYLAAKELKKQS
WRYHRKFNTWFQRHKEPTIATDEYEQGAYVYFDFQTPKDENRDGGWVQRIKNEFTFEYSY
LEDELAV
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgagtcggaagctacaaggcgagatagatcgggtgctgaagaaggttcaggaa
ggtgttgatgtcttcgacagcatctggaacaagtggaatgtctatgatacggataatgtt
aaccaaaaggaaaagtttgaggctgacttgaagaaggagattaagaagctgcagcggtat
agggaccagatcaagacttggattcagtctagtgagatcaaagataaaaaagtgagtgca
tcatatgagcaatccctggttgacgctcggaagctcattgagcgagaaatggagaggttt
aaaatatgtgagaaagagaccaagacaaaagcattctctaaggaaggactgggtcagcaa
cctaaaactgaccccaaagagaaagcaaagtcagaaacaagagattggttgaacaatgtg
gtgagtgaactcgagtcgcagattgatagctttgaagctgagttggaaggactatctgtc
aaaaaaggaaagtcaaggccgcccagattgacacatctcgagacatctatcacaagacac
aaggatcatataataaagttggaattgatattgaggcttctggacaatgatgaattaagt
ccagaacaagtaaatgacgtcaaagattttctggatgattatgttgaacgaaatcaggat
gattttgacgaattcagtgatgttgatgagctctatagcacgttgccactagatgaggtg
gagggtcttgaagatctagtaactgctggccccctcgtcaagggtactcctctgagcatg
aagagttctgtggcagcgtcagcatctcaagttcggagcataagtttgccaacacaccat
cagagcacttctcaagagaagactgacgatacaactttaccggatagcaattctgagaca
cttccaaaaacccctccccaaaagaatggggcccttcactcagcaccatcaacacccgtt
ggggaacgtccaagtttgaatgtgcccgtcagtagtgttccaaatgcaccagttgcttta
tcaacttccattcctgttcagacttcctcagaaagcatgggaagtttgtctccagtggcg
gccaaggaagaagatgcaacaaccttgccttcccgtaaaccaacctcatctgttgctgat
gctccaccgaggggaattggtagagttaatatccccacacagccccaactaagtcagcct
ttgtctccaagtccagctaaaggagctcgcatgagtgctacttcagcagctgaagttgca
aagagaaatataatgggagttgagagcaatgtccaacctctaacctctccgctcagcaaa
atggtattaccaccagctgtgaagggtaatgatggaactgtctctgatagtaaccctagt
gatgttgcggcaagcattggtagagcttattcaccgtctattgtatctggttcgcagtgg
aggcctgggagtccctttcagagtcagaatgaaacggtccgtggaagaactgaaatagta
ccagatcaaagggagaattacttacagctgtaccagcaactacaacaaggccatggtaac
ctcttaggcatggcttctctatccggaggaaacgagaagcagttttcttcacaacagcaa
aatccgcttttacagcagagctctggcatctctcctcatggtggctcgggaattcaggca
ccagggtttaatgtcatgagttctgcctccttgcagcactcgtcaaatgccatgactcaa
caatttggtcagcagccttctggtgcagatgtagatcatgccagaaatgatgatcagctg
caacaaaacttacctgatgattcaacttccatggcagcttcaaaaactattccaaacgag
gatgattctaaaggtctatttgataatccgtcgggaatgcccagctacatgttggatcaa
gtacaggtaactagggacggccctgatttctctcccggacaacccatacaacccggccaa
ccttcaagtagccacggggtcattggacgtagaagtaactctgaactaggaactattggt
gaaccttcagctttagggccaatgaacgatcagatgcacaatctccagatgcttgaagct
gctttctacagacttcctcaacccaaagattcagaacgtcctagaccctatactccgagg
aacccagcaatcacacctcaatcatttccccaaacacaagcgccaatcgtaagcaaccct
ttgttctgggaacgtttaggcagcgatgcttttggaaccgagcctttgttctttgcattt
tactatcagcagaactcgtatcagcagtatctagctgcaaaagagctgaagaaacagtca
tggagataccacagaaagttcaacacgtggtttcaaagacataaggagccaacgattgca
actgatgagtatgaacaaggagcctatgtatactttgatttccaaaccccaaaagacgag
aatcgagatggtggatgggttcaaaggatcaaaaacgagttcacgtttgaatacagttat
cttgaagatgaactcgccgtatag
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