Brassica napus (rape): 106434545
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Entry
106434545 CDS
T04128
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106434545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106434545
Spliceosome [BR:
bna03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
106434545
Complex C
U5 SnRNP specific factors
106434545
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
106434545
NCBI-ProteinID:
XP_022568540
LinkDB
All DBs
Position
C4:54950760..54960492
Genome browser
AA seq
2358 aa
AA seq
DB search
MWNNNDGMPLAPPGTGGPMIPPPHPSYTALPPPSNPAPPAEPTPEEAEAKLEEKARKWMQ
LNSKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKFRHDKRVYLGALKFVPHAV
FKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYMAQWGTMWIMMRREKRDRR
HFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVHTWFYDHKPLVKTKLI
NGPSYRKWNLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMPSFFTAKALNMCIPGGPKFE
PLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHSPMVMYI
KTEDPDLPAFYYDPLLHPISNTNKERRERNVFEDDGEDDFILPEGVEPLLKDTHLYTDTT
AAGISLLFAPRPFNMRSGRTRRSEDIPLVSEWFKEHCPPAYPVKVRVSYQKLLKCYVLNE
LHHRPPKAQKKKHLFRSLAATKFFQSTELDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHL
DYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGL
QYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWL
FFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMP
EGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNR
ERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEALAIYTTTVHWLE
SRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQQQREELGLIEQAYDNPHEAL
SRIKRHLLTQRGFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPN
WIKPADSEPPPLLVYKWCQGINNLQGIWDTGDGQCVVMLQTKFEKFFEKIDLTMLNRLLR
LVLDHNIADYVSAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQLYGLLLDLLLLGLTRA
SEIAGPPQMPNEFMTFWDTKVETRHPIRLYSRYIDKVHIMFKFTHEEARDLIQRYLTEHP
DPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENGFVSVY
SKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHM
KVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQT
RIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSKQTDVGVTHFRSGM
SHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIP
RINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQA
LGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLW
WSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVL
DQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAHKWPMSKPSLVAESKDVFDQKAS
NKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGN
WFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQII
WFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLA
KWKTAEEVAALVRSLPVEEQPKQVIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACL
KIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPD
KSVVTEPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEIT
PPSQQRQQIAEIEKQAKEASQLNAVTTRTVNVHGEELIVTTTSPYEQTAFGSKTDWRVRA
ISATNLYLRVNHIYVNSDDIKETGYTYIMPKNILKKFICVADLRTQIAGYLYGISPPDNP
QVKEIRCVVMVPQWGSHQHVNLPSALPEHDFLNDLEPLGWLHTQPNELPQLAPQDVTAHS
RILENNKQWDGEKCIILTCSFTPGSCSLTSYKLTQAGYEWGRLNKDTGSNPHGYLPTHYE
KVQMLLSDRFLGFYMVPENGPWNYNFMGVKHTVGMKYSVKLGSPKEYYHEEHRPTHFLEF
SNMEEADIAEGDREDTFA
NT seq
7077 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaacaacgacggtatgccgttagcccctcccggcaccggcggcccgatgatt
ccgccgccgcatccttcttacaccgcccttccgccgccttctaatccagctcctccggcc
gagcctactcccgaggaggccgaggcgaagctcgaggagaaggcccgcaaatggatgcag
ctgaactcgaagcgctacggcgacaagaggaagttcggattcgtggagactcagaaggag
gacatgccgcctgagcacgtcaggaagattatcagggatcatggtgatatgtcatcgaag
aagtttcgtcacgataaacgtgtgtaccttggagctcttaagttcgtccctcacgctgtg
ttcaagctcctggagaatatgcctatgccttgggagcaggttcgagatgtaaaggttctc
taccacatcaccggagctattacattcgtcaacgagattccatgggttgtggaacctatt
tacatggctcagtggggcactatgtggattatgatgcgaagggagaagagggatcgtcgt
catttcaagcgaatgcggtttccaccgtttgatgatgaggagcctccactggactacgct
gacaacttgttggacgtggatcctcttgagccaattcagttggagctagacgaggaagaa
gattctgctgtgcacacttggttttatgaccacaagccactagtgaagaccaagctgatt
aatggtcccagttaccggaagtggaatctctctcttccgattatggctacccttcacagg
cttgcaggccagttgctgtctgatttgattgatcgcaactacttctacttgtttgacatg
ccgtctttcttcaccgccaaggctctgaacatgtgcatacctggtggtcctaagtttgaa
cctttgtaccgtgatatggagaaaggggatgaagactggaatgagtttaacgacatcaac
aagcttatcattcgttcccctcttcgaactgagtacagaatagcgtttccccacctgtac
aataatcgtcccaggaaagtcaaactctgcgtgtatcacagtcctatggtgatgtatata
aagaccgaggaccctgatcttcctgcgttttattatgatcccttgcttcacccgataagc
aacaccaataaggaaaggcgtgaaaggaacgtttttgaagatgatggtgaggatgacttt
atcttaccagagggagtggaacctttgctgaaagacacccacctctacactgacactaca
gctgctggcatttcattgctgtttgcaccacgacctttcaatatgaggtctgggagaaca
aggcggtcagaagatattcccctggtgtcagagtggttcaaggagcactgtcccccagct
tatccggttaaagttcgagttagctaccaaaagcttttgaagtgctatgtactgaatgag
ttgcaccatagaccacctaaagcccagaagaagaagcacttattccgctctcttgcagct
acaaagtttttccagagtaccgagttggattgggttgaagtgggtctgcaagtctgcagg
caggggtataatatgctgaacctgctgatccacaggaagaatttgaactatctgcatctt
gactacaacttcaaccttaagcctgttaaaacattgaccaccaaagagcgaaagaagtca
cgttttgggaacgctttccatctctgccgtgagatcctccggctgacaaagcttgtagtt
gatgccaatgtccagttccgactaggaaatgttgatgctttccagttagctgacggtctg
cagtatattttctcccacgttggccagttgacgggtatgtaccggtataaatacagactg
atgaggcagattaggatgtgcaaggatttgaagcacttgatatactaccgtttcaatacg
ggtcctgtgggtaagggaccaggatgtggattttgggctccaatgtggagggtatggttg
tttttccttcgtggaatagttcctcttcttgaacgatggttggggaatcttcttgctcgt
cagtttgaggggcgtcattcaaaaggagttgccaaaactgtcacgaaacagagagttgaa
agccacttcgatttggaactgcgagctgctgtcatgcatgacgttcttgatgccatgcca
gagggtatcaagcaaaacaaagctcggacaatattgcagcaccttagcgaggcatggcga
tgttggaaagctaatatcccttggaaggtccctgggttacctgtgccaattgagaatatg
atcctgcgttatgtcaagtctaaggctgattggtggacaaatgttgctcactacaatcgt
gagcgtatcagaagaggggctacggttgataagactgtttgcagaaagaatcttggaagg
ttgactcgtctctggctaaaggcagaacaggaacggcagcacaattacctgaaagatggt
ccatatgtcactccagaggaagcactagcaatttatacaaccactgttcactggctggaa
tcgaggaagttttctccaattccattcccgccattgtcgtacaaacatgacacaaagttg
cttatcctggcccttgagagactgaaggaatcatacagtgtcgctgtgaggttgaatcag
cagcagcgagaggagcttggtctgattgaacaagcgtatgacaatcctcatgaagctctg
tctagaattaaacgtcatctcctcacccagcgtggcttcaaagaggttggcattgagttt
atggatctgtacagctacctgattccagtttatgaaatagagcctctggagaaaattact
gatgcctatcttgaccaatacttgtggtacgagggtgataagcgccacctgttcccaaac
tggatcaagccagcagactcagagccgccaccacttctggtttacaagtggtgtcaaggt
atcaataatttacaaggcatatgggacacaggggatgggcaatgtgtggtgatgctccag
actaagtttgaaaagttctttgagaagattgatttgaccatgttgaacaggctgcttcgt
ttggttcttgaccacaatattgcggattatgtgtctgccaagaataatgtggttctgtct
tacaaagatatgagtcatactaactcgtatggtctgattagggggcttcagtttgcctct
ttcgttgttcagctttatggactattgcttgatcttttgcttcttggtttgactcgggcg
agtgagattgctgggccaccacagatgcctaacgagtttatgacgttttgggatacaaaa
gtggagacacgtcatcccataagactgtattcccggtacatagacaaagttcatataatg
ttcaaatttacccatgaagaggccagggatcttattcagcgctaccttactgagcatcct
gatcccaacaatgaaaacatggtgggatacaacaataagaagtgctggccaagagatgca
aggatgaggttgatgaaacatgatgtcaatcttggtagaagtgtcttttgggacatgaag
aatcgtcttcctcggagcatcacaactttggagtgggagaatggctttgtctctgtctac
agcaaggataatcctaacctgctcttcagcatgtgtggatttgaagttcgcatacttcca
aaaatcaggatgactcaggaagctttcagcaacacaagagatggtgtctggaatctgcaa
aatgagcagaccaaggagaggactgccgttgcttttctgcgggttgatgatgaacatatg
aaggtgtttgagaatcgtgtgaggcagatccttatgtcttcaggatcaaccaccttcacc
aaaattgtcaataaatggaatacagctctaattggtctcatgacttacttccgtgaagcc
actgtgcatacgcaagagctcttggatctactggtcaagtgtgaaaacaaaattcaaaca
aggattaagatagggctgaactcaaagatgcctagtcgatttcctcctgttatcttctac
actccaaaggagattggagggctgggaatgttgtcaatgggtcatattttgattccacaa
agtgaccttcggtacagcaagcaaacggatgttggggtaacccactttaggagtggaatg
agccatgaggaagatcagcttataccaaatctatatcgttacatacagccttgggaaagt
gagtttattgattcacagcgggtgtgggcagagtatgctttaaagaggcaggaagcacag
gcccaaaataggcgtcttacattggaggatttggaggactcttgggataggggaattcct
cgaataaataccctgtttcagaaggataggcacacgttagcgtatgataaaggttggagg
gttcggaccgactttaagcagtaccaggtcctcaaacaaaatcctttctggtggacacat
cagaggcacgatgggaagttgtggaacttaaacaattaccgaactgatgttatccaagct
cttggaggtgttgagggtatccttgagcacactttattcaaggggacatatttcccaacg
tgggagggtcttttctgggagaaggcatccgggtttgaggagtcgatgaagtataagaag
ctgacgaatgcacagaggtctggtctgaaccagattccaaatagaagattcacgctttgg
tggtcgccaacaattaatcgagcgaatgtgtatgtgggtttccaagtgcaattggatctg
accggaatattcatgcatggaaagattcctacactcaagatatctctgattcagattttc
cgtgcccatttgtggcaaaagatccatgagagtgttgttatggatctttgtcaagtattg
gaccaagagttggatgctttggagatagaaactgttcagaaggagacaattcatccaagg
aagagttataagatgaacagctcttgcgctgatgttcttctatttgctgcccataaatgg
ccaatgtcaaaaccaagcctggttgctgagtcaaaggatgtgttcgaccagaaagctagc
aacaagtattggatagatgtgcaacttcggtggggagattatgattctcatgatattgag
cgttatactagggccaaattcatggattataccactgataacatgtcaatctatccatct
ccaacaggtgtcatgattgggcttgatctggcatacaatttgcattctgccttcggcaat
tggttcccaggttctaaacctcttcttgcccaagcaatgaacaagatcatgaagtctaat
ccagctttgtatgtgttgagagagaggataaggaaaggtctgcagttatactcatctgag
cctacagagccatatttgtcatctcaaaactatggtgaaatattcagcaatcaaataata
tggtttgtggatgataccaatgtctatcgtgtcacaattcacaagacatttgaaggaaat
ttaacaacaaagccaatcaatggtgcgatctttattttcaatccaagaactgggcagcta
ttcctgaaggttatccatacaagcgtttgggctggtcagaagcgtcttggtcagctagcg
aaatggaaaactgctgaagaggtggctgcacttgtgaggtctctccctgttgaagaacag
ccaaaacaagttattgttactcgtaaaggaatgctcgacccccttgaggtccacttactg
gatttccccaacattgttatcaagggaagtgaactgcagcttccgttccaggcgtgcctt
aagattgagaaatttggtgatctgattttgaaggccacagaaccgcagatggtcctattc
aatatctatgatgattggttgaagagtatctcttcgtacactgccttttcaagacttatt
ctgatccttcgtgcgcttcacgtgaataatgagaaggctaagatgttgttgaagcccgac
aagtctgttgtcactgagccacatcacatctggccctctctcactgacgaccagtggatg
aaggtggaggtagctcttagggatcttatcctatctgactacgcaaagaagaacaatgtg
aatacctcagctctgacacaatcagagatcagagatattatccttggagctgagattacc
ccaccctctcaacagaggcaacagatagctgagattgagaaacaggcaaaagaagccagc
cagcttaatgcagtcacaaccagaacggtaaatgttcatggtgaggagctcatcgtcact
accactagcccctacgagcaaactgcattcggttccaagacagattggcgtgtgcgtgca
atatcagctaccaacctctacctcagagtcaatcacatctacgtgaactcagatgacata
aaggagacgggatacacatacatcatgccgaagaacatcctgaagaagttcatatgcgta
gcagatcttcgaactcaaattgctggatatctatatggtatcagcccaccggataatccc
caggttaaggaaatccgttgtgttgtgatggtgccgcagtggggaagtcatcagcatgtg
aacctgccgtcagctcttcctgagcatgatttccttaatgatctcgagccattgggatgg
ctgcacacacagcctaacgagctacctcaattggcaccacaggatgttaccgctcattcc
cgcattctggagaacaacaagcaatgggatggagaaaagtgtatcatcctaacatgcagt
ttcactccgggatcctgctctttgacatcatataagttgacccaagccggatatgaatgg
ggacgtctcaacaaggacacaggcagcaatcctcatggctaccttcccacccattatgag
aaggttcaaatgctgttgagtgaccgcttcctcggattttacatggttcctgagaacgga
ccgtggaactacaactttatgggagtgaagcacacggtgggaatgaaatacagcgtcaaa
cttggatccccaaaggagtactaccacgaggaacatcgacccactcatttcctagagttc
agcaacatggaggaggctgatatcgctgagggagatcgtgaggacacctttgcttga
DBGET
integrated database retrieval system
