Brassica napus (rape): 106435960
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Entry
106435960 CDS
T04128
Name
(RefSeq) nuclear exosome regulator NRDE2-like
KO
K26109
nuclear exosome regulator NRDE2
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106435960
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106435960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
UTP6_C
Motif
Other DBs
NCBI-GeneID:
106435960
NCBI-ProteinID:
XP_048614418
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Position
C5:46386181..46391067
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AA seq
1140 aa
AA seq
DB search
MKMSKTPENGDGEQNTTGLFPLFPTPATSISAISSAPQWLRNASFTTDLSVIDAAASTAP
SLSDVEASEEDEEGDAGRSKRETNQPRVYNLIEEEEEEEEGSESDDDRVKKKRGKKKKRK
RDSDEYYTKPAKDYYLDTRPDPDNLAYGSIYRMNVPRYKLDNSQRGSELGSMKLYLRNRR
GSMLEAEIDVNSLDGKAKSDDRYWYAKNAAMERNKNFRRIRLSASRDAVDSSFDRFIPLE
EGEAVQESEEEDVSVVGTSWEDEVLNKTREFNRQTRERPHDEKAWLAFADFQDKVSSMQS
QKGVRLQTLEKKISILEKAFELNPDSEELLLALLKAYRSRDSADVLISRWEKALMQNSSS
YKLWREFLRVVQGEFSRFKVSEVRKMYSYAIQALFSACSKRHRQMDATSEPLDSTLIQQE
LILVDMLVSLCRFEWQAGYRELATALFQAEMEYSIFSPSLLLSEQSKLRLFAHFWSSNGA
RVGEEGAFGWSLWLEKEEEQRQKMLKEESSDDNDVGGWTGWTEQLSDRKEDSSIATANPG
EGDVNQEGLDEEMEDEDSRPEDDTEAMLKLLGIDVNAAASDEVKDTSTWVKWFEEEVSRD
QNQWMPTRKAGEFSSVDEMGEREDEEQLSSLVLYEDINGYLFSLRSNEARLSLVYHFVDF
FGAHISPWTSSNSLWWTEKLNSLETLSESMLENLRNVHGSLSKSDGANDFSLGSLLGGSN
DISMRTEMMKFLRNAILLCLNVFPRNYILEEALLVAEELFVTNMKTCEVATTPCQALAKR
LLKSDRQDLLLCGVYAQREAASGNMKHARRIFDMALTSICGLPKELQDNAPLLYLWYAES
EIANSCGSSLETESSSRAMHILCYLGSGLAYVPYTSQPSSMQILRARQGFREKLKKIQSI
WSHGVTDDQSAALVCSAALFEELTNDLSRTVEILEHMFSSVLPGRRSQSHQLEILFNYYV
RMLQRHQDDLTLSKLWKPISDGMQLYPFNPELYRALVDICNHRMTSHKLRMMFDDYSRKT
PSVVVWLFALSYELSRGGSLHRIRGLFERALAQDTLNSSVILWRCYIAYEIDIAHNPSAA
RRIYFRAINACPWSKKLWLDGFGKLSSVLSAKEMSDLQEVMRDKELNIRTDIYEILLLQG
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgtcgaagacaccagagaacggcgacggcgaacagaataccacaggcttgttc
ccccttttccctactccggcgacctcgatctcagctatatcaagtgctcctcaatggctt
cgcaacgccagcttcacgacggatctctccgtcatcgacgccgcagcttcgacggctcct
tccctatccgatgtcgaggctagcgaagaagatgaagaaggagacgctggtagaagtaag
cgtgaaactaatcagcctagggtttacaatttgattgaagaagaagaagaagaagaagaa
ggatccgagtctgatgacgacagggtaaagaagaagaggggtaagaagaagaagcggaag
agggattctgatgaatactatacgaagcctgccaaggattattacttggatactcgtcct
gatccagataatcttgcttatggctccatttacaggatgaacgttcctcgttataaactt
gacaattctcagagaggttctgagttaggttctatgaagctgtatctaaggaataggcgt
ggctctatgcttgaagcagagattgatgttaattctttggacgggaaagcaaagtctgat
gacagatactggtatgcaaagaatgcagccatggaacgaaacaagaatttcaggcgtatt
cgtttgtctgcttccagagatgctgtcgattcgtcctttgatcgtttcattcctctagag
gaaggtgaagctgttcaagaaagcgaggaggaagatgtttcagtggtgggaacgtcgtgg
gaggatgaggtgctgaataaaacccgagagtttaacagacagacgagggaacgtcctcat
gatgagaaggcgtggctggcatttgctgattttcaagacaaggtttcgagtatgcagtct
cagaaaggtgttcgcttgcagactttggagaagaagattagtatacttgagaaggctttt
gaactgaacccagatagcgaagaactgctgcttgcccttctcaaggcgtaccgaagcaga
gacagcgcagatgtgctgatcagtaggtgggaaaaagcacttatgcagaattcctcaagc
tacaagttgtggagggagtttcttcgtgttgttcaaggggagttctccagatttaaagta
tcagaagtgaggaagatgtattcttatgcaatccaggcactcttttctgcttgcagcaag
cgacataggcagatggatgcaacatctgaaccattggattctactctcatccagcaggaa
cttattctagtggatatgctagttagcctctgcaggtttgaatggcaggctggttaccgg
gagctggccacagcgttatttcaagctgaaatggaatatagcatcttttctccatctttg
ttgctaagtgaacagagtaaattaagactgtttgcgcacttttggagcagtaatggtgct
agagttggagaagaaggagcttttggatggtctttgtggttggagaaagaggaggaacaa
aggcaaaaaatgttgaaagaggaatcttctgatgacaatgacgtaggcggttggacaggt
tggacagagcaattgtcagataggaaagaagacagtagtattgctacagctaaccctgga
gaaggtgatgttaatcaggagggcctggacgaagaaatggaagacgaggatagcaggcct
gaagatgacactgaagctatgttaaagctattaggcattgatgtcaacgctgcggccagt
gatgaggttaaagatacttcaacatgggtcaaatggtttgaagaagaggtctctcgagat
caaaatcaatggatgcctactaggaaagccggtgaattctcaagtgttgatgaaatgggc
gagagagaagatgaagagcaactctcaagtcttgtactatatgaagatataaatggatat
ctattttcattacgttcaaatgaggctcggttatctctggtataccatttcgttgatttc
ttcggtgcacatatctccccatggacttcaagcaacagtttgtggtggacagagaaatta
aatagtcttgaaacattgtcagagtctatgctagaaaatttgagaaatgttcatgggtct
ttgtcgaaatcagatggtgccaacgatttcagcttgggatctcttttaggtggcagcaat
gatatatctatgcggaccgagatgatgaagtttctccgcaatgccatcttgctttgtctg
aatgtttttcctcgcaactacattttggaagaagctctacttgttgcagaagagctattt
gtaacaaacatgaaaacatgtgaagtcgcaacaaccccatgccaagctttggccaaacgt
ctcctgaaaagtgaccggcaggatctactactttgtggagtttatgctcagcgagaagct
gcttctggaaatatgaaacatgcaagacgaatctttgacatggcactgacttctatctgt
ggcctccctaaggaattacaggataacgctccattgctatatttatggtatgccgaatca
gaaatagccaatagttgtggcagcagtctagaaacagaatcatcatctcgtgctatgcac
attctgtgctatctgggaagtggtctagcttatgttccttatacttcccagccttcaagc
atgcagatccttagagcacgccaggggttcagagagaagcttaagaagatacagtcaata
tggtctcatggtgtcacagatgatcaatcagcagcgcttgtttgttcggcagctctattt
gaggagctaacgaatgacctttctcgtactgttgagatcctggagcacatgttcagttct
gttcttccaggaagaagaagtcaaagtcatcaacttgaaatcttgttcaattattacgtg
agaatgcttcagaggcatcaggacgacctaactttgtcaaaactgtggaagcccatatca
gatggaatgcaactgtatcctttcaatcccgagctttaccgagctttggtagacatctgt
aatcaccgtatgacatcccataaattgagaatgatgtttgatgactactcccgcaaaact
ccatccgtagttgtttggctatttgcgctttcgtatgagttgagtagaggaggctcccta
cacagaatccgtggattgtttgaaagggcattggcacaagatacactaaacagctcggtg
attctatggcgttgctacattgcatatgaaatcgacatcgcacacaatccatcagcagct
aggaggatttacttccgagctataaatgcttgcccatggtcgaaaaaactatggctggat
gggtttgggaagctgagttcagtactgtcggcgaaagagatgtcagatttacaagaagtg
atgcgagacaaggaactcaacattaggacagatatttacgagatacttcttttgcagggt
tga
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