Brassica napus (rape): 106436148
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Entry
106436148 CDS
T04128
Name
(RefSeq) structural maintenance of chromosomes protein 3-like
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bna03036
]
106436148
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
bna00535
]
106436148
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
106436148
Meiosis-specific proteins
Cohesin complex and associated proteins
106436148
Proteoglycans [BR:
bna00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
106436148
BRITE hierarchy
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Paralog
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_21
AAA_15
AAA_29
ABC_tran
Motif
Other DBs
NCBI-GeneID:
106436148
NCBI-ProteinID:
XP_048605379
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All DBs
Position
C3:17248732..17257713
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AA seq
1254 aa
AA seq
DB search
MILNLVPDALSQNLDDDDHVLVIIEGFKSYNEQTATEDFSSKVNCVVGANGSGKSNFFHA
IRFVLSDFFQNLRNEDRNALLHEGVGHQVGSAFVEIVFDNSDNRIPVDKDEIRLRRAIGL
KKDEYFLDGKHITKNEVVDLLESAGFSRSNPYYVVQQGKIASLTMMKDSERLDLLKEIGG
TRVYEEKRCESLKIMQDTGKLSVCTAVILEPPSLFLVHAWVSRKSNTYSRMTCLTGIKRN
HIIQAVQYLDEKLRELDEEKEELRKYQQLDKQRKSLEYTIYEKQLHDTREKLEQTEAERT
KASEESTKMYDRVEKAQDECRSLDESLAGLTKELQTMNNKKETVEALKTEAIKKKTKLEL
DENDLKERIAGNIQSKNDALEQLSMVEREREDSLKELEAITPLYESQVDKEKQTTKRIME
LEKKLNILYQKKGRATQFSDKATRDEWLRKETKYLKRVLDSNMGQEQKLQDEIFGLNTDL
KERDAHIKNHEVEISELDTHISKSHEQFNIKKRERDEEHRKRREKWGEESQLSSEIDKLK
MELERAKKNLDHATPGDVRRGLISIKRICSEHKINGVFGPLVELVDCDEKFFTAVEVTAG
NSLFHVVVENDDISTKIIEHLNSRKGGRVTFIPLNRVNAPHVNYPQCSDAIPLLRRLKFD
SKFAPAFGQVFGRTVVCQDLNVATRVAKSDGLDCITLEGDQVSRKGGMTGGFYDHRRSKL
RLMNTIIQNMKSIDTKEKVLEDVRRQLQVIDQQITQIVTEKQRLESDWTHSRLQVEQLKQ
EIANETKQKHAIHIALEHKEKSLGDVRIQMEQLRSSMAMKEAEMATELVDHLTPEETEEL
SRLNPEIEDLKDKLIAFKTDRIETETRKAELETNLSTNLKRRIDELHATIASVDDYSLPS
SAGLETQELDDAKLLVEEFTNELQGLCRSIDEKTKQVKKIKDKKAKLKTLQDDCEMKVQD
ANKKLEELFSLRNTLLSKQEEYRKKIMGLGPFSSESFDMYKQKSIKELQKVLHGCSEQLQ
QFSHVNKKALDQYVNFTEQREELQKRKTELDAGDEKIKELITVLDQQKDESIERTYKMVS
FHFREIFSQLVQGGHGHLVMMKKTTKKDRDHDDEDGCGEAATERRVEKYDGVTVKVSFTD
QWETRSMKQLSGGQKTVVALALIFAIQKCDPAPFYLFDEIDAALDTQYRTAVGNMIRGLA
DDSVSTQFITTTFRPELVKVADKMYGVFHENNASIVKVISKEQALNFIQNDQSP
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atgatccttaatcttgttccagatgctttatcacaaaaccttgacgatgatgatcacgtt
ctcgttataatcgaaggtttcaagagttacaatgagcaaactgctactgaggatttcagc
agcaaagttaactgtgttgttggggcaaatgggtctgggaaaagcaactttttccatgca
attcgttttgtattgagtgacttcttccaaaatctgcgtaatgaagataggaatgcgtta
ctccatgaaggtgttggtcatcaagttggatctgcgttcgtggagattgtctttgataat
tctgacaaccgcatccctgttgataaagatgaaattcgcttgcgccgagctattggtctg
aagaaggatgaatatttcttggacgggaaacacattacaaaaaatgaagttgtggattta
ctggagagtgctggattttctcgttctaatccttactatgttgttcaacaaggaaagata
gcctcgttgacaatgatgaaagattcagaacggctagatctgctaaaagagattggtggt
acccgtgtttatgaggagaaacgctgtgagagtttgaaaattatgcaggatacaggcaag
ttatcagtgtgcactgcagtaatactggaacctccttcattatttctcgtgcatgcatgg
gtatctcgaaaatctaatacatatagccgcatgacttgtctcacagggattaaacgaaat
catatcatccaagctgtccaatacttggatgaaaaactaagggaactggacgaagagaaa
gaagaactcagaaaataccaacaacttgataagcagagaaaatcactcgaatacaccatt
tatgaaaaacagcttcacgatactagggagaaactggaacagactgaagctgaaagaact
aaagcatccgaagagtctacaaaaatgtatgacagagttgagaaggcccaggacgagtgc
aggagcttagatgagtcgctggcaggactgacaaaggagcttcagacaatgaacaataag
aaagaaactgttgaagcactaaaaactgaagctataaagaagaagacaaaacttgagctt
gatgagaatgatttaaaggaacggattgctggaaatatccagtcaaagaatgatgcactt
gagcaacttagtatggtggaaagagaaagggaggattctttgaaggaactagaggcgatt
actcctttgtatgaaagtcaggttgacaaggagaagcagacgaccaaaagaatcatggag
ctggagaagaagcttaatattctttatcagaaaaagggacgtgcaactcagttctcagat
aaggctactcgagacgaatggctccggaaagaaactaaatatctcaagcgtgttctagac
tcaaacatgggtcaagagcaaaaacttcaggatgaaatttttggcctcaatactgatttg
aaggagcgtgatgcacacatcaagaaccatgaagttgaaattagtgaactggacactcac
atttccaagtcccatgaacaattcaatattaaaaagagggagagggatgaagaacataga
aaaagaagggaaaaatggggagaagaaagtcaactatcttctgaaattgacaagttgaaa
atggaacttgagagggcaaagaaaaatcttgatcatgcaactccaggagacgtaaggcga
ggactgatctctatcaaacggatttgctctgagcataagatcaatggagtttttggtcca
cttgttgagctggttgattgcgatgagaagtttttcaccgcagttgaagtcactgctgga
aacagcctatttcacgtagtagttgagaatgacgacatttcaaccaagataattgaacac
ctgaattctcgaaagggtggacgtgtgaccttcataccgctgaatcgagtaaatgcacct
catgtaaactatccacaatgttctgatgcaataccactgctgaggagattgaagttcgac
tccaaatttgcaccagcatttggccaggtttttggtagaacagttgtatgtcaagatctg
aatgtagcaacaagagttgctaagagtgatggcttggattgcataactttagaaggtgac
caggtgagcagaaagggtggcatgactggtggattttatgaccacaggcggtcgaaattg
agattaatgaataccataatacaaaatatgaagtctatagatacgaaggagaaggtgttg
gaggatgttagaagacagctacaagtgatagatcagcagatcacacagattgttactgag
aagcagagacttgaatcagactggacgcatagcagattacaggtggagcaactgaagcaa
gagatagctaacgagactaagcagaaacatgctatacatatagcccttgaacataaggag
aaatcactaggtgatgttagaatacaaatggagcagttaagatctagcatggccatgaag
gaagctgaaatggccacggaacttgtggatcacctaaccccagaagaaacggaagaatta
tcacgattaaacccagaaattgaggatcttaaggacaaacttattgcattcaagacagat
cggattgagacagagacaagaaaagcagagttggagactaatttgtctaccaacttaaag
aggagaatagatgagttacatgctactatagcttccgtcgacgattatagtttgcctagt
tcagctggcttagaaacacaagaacttgatgatgcaaaactattggttgaagagttcaca
aacgagctccaaggtctctgtcgaagcattgatgagaagactaagcaggtcaagaaaatt
aaagataagaaggcgaagttaaagacattgcaagatgactgtgagatgaaagtgcaagat
gcaaataaaaagttggaggaactattcagccttcgtaacacactcctttctaagcaagaa
gagtataggaagaagattatgggattgggtccattttcatccgaatcttttgacatgtat
aaacaaaaaagtataaaggagctgcagaaggtgctacacgggtgcagtgaacagctgcaa
cagttcagccatgttaacaagaaagcgcttgatcaatatgtaaatttcacagaacagcga
gaagaacttcagaaacggaaaactgagcttgatgcaggagatgagaaaataaaagaattg
attacagttctggatcagcagaaagacgaatctatagaacgtacttacaaaatggtttca
tttcacttccgggaaatattctctcagcttgtgcaaggtggacatggtcaccttgtcatg
atgaagaagactacgaaaaaggaccgtgatcacgatgacgaagatgggtgtggtgaagct
gctacagagagaagggttgagaaatacgatggtgtaacagtgaaggtgtcgtttactgat
caatgggagacacggtcaatgaaacagttgtcgggaggacaaaagaccgttgttgctctt
gcattaatatttgccatccagaaatgcgatcctgcaccgttctatctctttgatgagatt
gatgcggcacttgatactcagtatcgaactgctgtcggcaacatgattcgtggtttagct
gatgacagcgtaagcacgcagttcataaccacaacttttcgtccggagctagtgaaagtt
gcggataagatgtatggagtgtttcatgagaataatgcgagtattgtgaaagttatttca
aaggaacaggcgttgaacttcatccagaatgatcagtcgccatga
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