Brassica napus (rape): 106436229
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Entry
106436229 CDS
T04128
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106436229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106436229
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106436229
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106436229
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
106436229
NCBI-ProteinID:
XP_013732643
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Position
A3:complement(4720855..4725031)
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AA seq
609 aa
AA seq
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MSNLHSSLNGSASNLPDGSGRSFASSYSGQSGAPSPGFHGNLQGLHNLHGSYNLQGTLSS
RNSSMNSLPSPGVQQPNGSFSSGRFASSNLPAPLSQLSHNSSHGHSGIPNRGGINIGNPG
FSSNANGGAGSIPGILSTSPGLGNRNSVPMGMSQLLGNAGPRITTNSMGNMVGGGNLRNI
SSGGLSMPGLSTSRLNLGANSGSGLGVQGQNRMMGGLPQGSQVMSMLGNSYHTGGGQLSQ
NHLQSVNNMMLGDHSNDSSLFDINNDFPQLTSRPGSAGGTQGQLGSLRKQGLGVPLAQQN
QEFRIQNEDFPALPGYKGGSSDYPMDMHQKEQLHDNAMSMMHSQNFPMARSGGFNLGESY
SSHRPQQQPQHTSSTGGLQGLGLRPLNSPNPVSSNGYDQLIQQYQQQRQNQSQFPVQQMS
SMNQFRDSELKAAQAEADPFCLLGLLEVLNGSNPELTSLALGIDLTTLGLDLNSTGKLYK
TFASPWTNEPAKTEVEFTVPSCYYATPPPPLTRASFKKFSYELLFYTFYSMPKDEAQLYA
ADELYERCWFYHKELRLWFFRVGEPLVRTAAYERGTYECLDPNSFKTVRKEHFVVQYEHM
EKRPSLLQH
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaccttcattcatctcttaatggttcagcttccaatttaccagacggttcaggc
agatcttttgcttcttcctattccggacagtctggtgctccttctcctggttttcatgga
aatcttcagggacttcataaccttcatgggagttataaccttcaaggtactctctcatca
agaaactcgagtatgaatagtctcccatcccccggtgttcaacaacctaacgggagtttt
tccagtggacgatttgcttctagtaacctacccgctcctctctctcagttatctcataac
agctcgcacgggcactcgggaatcccgaatagaggtgggattaacattggcaaccctggt
tttagtagtaacgctaatggaggcgccggttctattcctggcattctctccacttctcca
ggacttggtaaccggaatagtgttccgatggggatgtcccagctgttgggaaacgctggt
cctcggataacaacgaattctatggggaacatggttggtggaggtaacttgaggaatatc
agctctggtggattgtctatgcctggtctttcgacttctcggctaaatttgggagctaat
agcgggtcaggattaggtgttcagggacaaaaccgaatgatgggtggacttcctcaagga
tctcaagtcatgtctatgctggggaattcctaccatactggtggcggccaactttcgcag
aaccatcttcagtcagttaacaatatgatgctcggtgatcattccaacgatagttcactt
tttgacatcaataatgatttccctcagctgacaagccgtcctggttctgctggtggcact
caaggacaactcggttctttgaggaaacaaggtttaggagtcccgcttgcccaacaaaat
caggagttccgcattcaaaatgaggactttccagccttacctggatataaaggtggtagt
tctgattatccaatggacatgcatcagaaagaacagctccatgacaatgctatgtcaatg
atgcactctcaaaactttcctatggctagatctggtggtttcaacttgggggaatcatat
tcatcacatcgtccacaacaacagccacagcatacttcatctactggtgggctacaaggt
cttggcttgagacctctaaactcgcccaatccagtctcaagcaacgggtatgaccagctt
attcagcagtatcagcagcagagacaaaaccagtcgcagtttcctgtgcaacaaatgtca
tccatgaaccaatttagagactctgagttgaaagcggcacaagcggaggcagatcctttt
tgcttgcttggcttgctagaggtactaaacgggagcaaccctgaactgacctctcttgct
cttggcatcgacttaacgacgctagggttggatttgaactcaactggaaaactttacaag
acctttgcttccccttggaccaatgaaccggcgaagactgaggtcgagttcacagtacca
agttgttactacgccacaccaccacctccgttaactcgagcaagtttcaaaaagttctcg
tatgagttattgttctacacattttacagtatgccaaaagacgaagcacagctatacgca
gcagatgaactttatgaaagatgttggttttaccacaaggaactgagattatggttcttc
agagttggagagcctttggtaagaacagctgcatatgaaagaggaacatacgagtgcctc
gatccaaactcgttcaaaacagtcagaaaggaacattttgttgtccagtacgagcacatg
gaaaagagaccaagcttgctgcagcattga
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