Brassica napus (rape): 106436280
Help
Entry
106436280 CDS
T04128
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
bna
Brassica napus (rape)
Pathway
bna03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106436280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106436280
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
106436280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR_2
Hamartin
Motif
Other DBs
NCBI-GeneID:
106436280
NCBI-ProteinID:
XP_022557730
LinkDB
All DBs
Position
C3:20411140..20414308
Genome browser
AA seq
541 aa
AA seq
DB search
MSHCLVLKPSCMGCGSQSDLYGSSCRHMTLCLKCGKTMAENKAKCLDCGTVLTRLIREYN
VRAATPTDKNYFIGRFVSGLPNFKKGSSENKWSLRKDIPQGRQFTDAQREKLKNKPWILE
DETGQFQYQGQLEGSQSATYYLLVMQNKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMK
NRRKTADGYNRWMMKGGNNDDKEAGGSSGGGGGGRGRKKSSGGEEEEGNVSDRGEEDEEE
EAARKSRLGLNKKGNDDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVGNDPDE
REDLLAPEIPAPPEIKQDDEDEENGEEEGGLSNSGKELKKLLGKANGLNESEEEEDDDDS
DDEEETNFNPVTNSKQKEATKEEPVESTPPKPAPPSSSRGTPSAKPSKGKRKLNDGDSKK
PSGSSVQKKVKTENQETKPSVKEEKNNSVSKSKAPTKAVKPEPTPATASASASAATGPVT
EDEIRAVLMEKKQVTTQDLVSRFKARLKTKEDKNAFADILRKISKIQKNAGSQNFVVLRG
K
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcactgtttggttctgaagccgtcgtgtatgggctgtggatcgcagtccgatctc
tacggaagctcctgcaggcacatgacgctatgcctaaagtgcggcaaaaccatggctgag
aacaaagccaagtgtctcgattgcggaaccgtcctcacgagactgattcgggagtataac
gtccgtgcggcgacaccgacggataagaactacttcattggtaggttcgtgagtggtctt
cccaatttcaagaaaggctcttctgagaataaatggtctcttcgtaaagatatacctcaa
ggtcgtcagttcactgatgctcaacgggagaagttgaagaacaagccttggatcctggaa
gatgaaacggggcagtttcagtaccagggacaacttgaaggatcccagtctgcaacttac
tatctcttagtgatgcagaacaaggagttcgtcgccattcctgccggttcttggtataac
ttcaacaaggttgcacagtacaagcaacttacactggaagaagcggaagagaagatgaag
aatcgtaggaaaactgcagatgggtataataggtggatgatgaaaggcggaaataatgat
gacaaagaggcgggtggaagcagtggaggtggtggtggcggcaggggtcgcaagaagtct
tcaggcggcgaggaagaagagggtaatgtctctgacagaggagaggaagatgaagaggaa
gaggctgcacgcaagagtagactcgggcttaataaaaagggcaatgacgacgatgatgaa
gaaggtccaaggggtggtgatcttgacatggatgatgatgacattgagaagggggatgac
tgggagcatgaagagattttcactgatgatgatgaggcagtgggtaatgatcctgacgaa
cgtgaagatcttctggcgcctgaaattcctgctcctccagaaataaagcaggatgatgag
gatgaagaaaatggagaagaggaaggaggattgagcaattctggtaaagagttgaagaaa
ttgctcggcaaggctaatggtttgaacgagtctgaggaagaagaggacgatgatgattca
gatgatgaggaggagacaaacttcaatccagttacgaattctaaacagaaggaagccacc
aaagaagaacctgttgagagcactcctccaaagcctgcgccaccttcatcttctcgtgga
acgccttctgctaaaccatcaaagggaaagagaaaacttaatgatggcgactctaaaaaa
cctagcggcagttctgttcaaaagaaagtgaagactgaaaatcaggagacgaaaccttca
gtgaaggaagagaaaaataactctgtttccaaatccaaggcaccaacaaaggctgtgaaa
cctgaaccaactccagctactgcctcagcttcagcttcagctgctacagggcctgtgacc
gaagatgaaatccgagctgtcctcatggagaagaagcaagtcactacgcaggaccttgtc
tctaggttcaaggcaagacttaagaccaaagaggacaagaacgcttttgccgatattctg
aggaagatctcaaagatacagaagaatgccggttctcagaacttcgtcgttttgaggggg
aaatga
DBGET
integrated database retrieval system
