Brassica napus (rape): 106436321
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Entry
106436321 CDS
T04128
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
bna
Brassica napus (rape)
Pathway
bna04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
106436321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bna04131
]
106436321
Membrane trafficking [BR:
bna04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
106436321
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
Clathrin
VPS8_N
Beta-prop_RIG_2nd
Beta-prop_WDR5
WD40_CDC20-Fz
WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR3_1st
WD40_WDHD1_1st
ANAPC4_WD40
Beta-prop_Aladin
Beta-prop_EML_2
TPR_VPS8_2
WD40_Gbeta
Beta-prop_THOC3
WD40_Prp19
Beta-prop_HPS5
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML
zf-RING_2
zf-RING_Vps41
Beta-prop_CAF1B_HIR1
zf_RING_Vps8
EIF3I
Motif
Other DBs
NCBI-GeneID:
106436321
NCBI-ProteinID:
XP_048595145
LinkDB
All DBs
Position
A9:938991..947490
Genome browser
AA seq
1898 aa
AA seq
DB search
MKNSHVELDLDSFLVSDSDSEPDSDPSSVPHRTIDEILNASSSSSPSSSPPPSPPLLREQ
LNRRNQNDPSRRPQSELLRGFPSVTDPARRNPAPSTSLRQLPLPSLFAGVRSNVKPGAAL
AAAVAASRLVPTPHAAIIKSRRASSASSELLLSGAGESSSNQDEDDHEVLSSNGDSAGIE
NPSFDRESRLEDEDDGVVVASQDNEAKVMEVQASDIDDYEKNSKPDLVTSSSGVDVEEEV
STEQEGMAATEAGDADAMLVAPSAESLESQNLNENSDDVKVSNDEESSDGDVNKNDAKEE
EGGDDAFIPDDGSSVSGISELVEERIEEMEKERMSKREKLKSRSFRKQLVLAEEFEKKQA
YTGLHWEEGAAAQPMRLEGVKIGSTNLGYFDVDTSNIISRTISSQAFKRDHGSPQVLAVH
LNFIAVGTSKGVIVVVPSKYSSDTADQMESKMIWLGLQGERSHSPVTSVCFNQQGGLLLA
GYGDGHVTVWDVQRASAAKVITEHTAPVVYAFFLGRDSQGSRIFKVITSDNKGVVFKHTF
SWTLLLNMYTVKTQCLLDGQKNGMVLSASPLPDEYFGSSLASSKAGNTATPSSSISSMVG
GVVGVDSSWKLFNEDSSAVEEGVVVFVTYQTVLVVKLIPDLEVYAQLPRPEGVREGSMPY
TAWKCSMENSSKEAKDRVSFLAIAWDRRVQVAKLVKSKLKECAKWSLDSAAIGVVWLDDQ
LLVIPTVTGHLYLFTRDGVVIHQTSFSVDGSSGNDLISYHTYFTNVFGNPEKAYHNSVGV
RGASVYILGTARLVISRLLPWKERVDVLRRGGDWMGAFNMAMSLFNGQAHGVVDLPKTVD
AIREAIAPSLAELLRSYVDEVFSYITIAFSSQIEKNGVTNEPSSGTNNVNLEIEEQYNRV
GGVAVEFCVHINRMDLLFDEIFSRFVAVQQRDTFLELLEPYILKDMLGSLPPETMQALVE
HYSRKGWLQRIEQCVLHMDISSLDFNQVVRICREHGLYGALLYLFNKGLDDFRSPLEELL
IVFRNSERQRSTAIGYRMLVYLKYCFLGLAFPPGHGTLVPTRLPSLRTELIQFLLEKSNS
HESSRCVSSPRIYLNLYHLLELDTEATLDVLRYAFAESEMVDHETLLLESGEVSFESKTD
GSIPEDRCNDMLIQNVIEALVHIIDGGFSQLDESGDPDDSKSDKKWPSKEDTSHLFEFVA
YYAARGRASIPKSVLAQILDYLTSDHILPTYNMSPKMRENQFLNLLQAVPVTDWDVAYVS
QLCEKAHFYQVCGYIHTIGRRYVAALESYMKEEEEPIHSFCYVNKMLSQLNGNEFTAFQS
AVIDRIPELLELSREGTFFLIIDNLKDNITRIQEQLHSHPRSMFLYLKTVIEVYLSGSLD
FSRLRKHEAVDSLGENTRRNIPKEAELYLEGLNGFPKFIQDNPVNVTDDMIELYLELLCK
YEPKSVLRFLETFDNYRVEHCLRLCQKYGIADAAAFLLERVGDAASALSLTLSGLSENFV
ALENAVACLISELKLGASEVATLEQSNSALELKEVNDIQGVLQACIGLCQRNTPRLNPEE
SEILWFRFLDTFSEPLMDSYREPRTVDEINKGTSSVKSLELCVDEAVDTIKWRIPRSNVA
GTHILRKLMSQFIKEIVEGMIGYVRLPTIMSKLLSDNGTQEFGDFKLTILGMLGTYGFER
RILDTAKSLIEEDTFYTMSLLKKGASQGYAPRSLLCCICNCPLTKTFSTLRVRVFNCGHA
THLQCEVSESETSSSGCPVCMTKKTTQSSSKGKSFYLDYGLISTVSSNTGTSQRASPYSY
ENEMIDHSHSQQISRFEMLTKLQKDQRLVQIESLPRLKLSPPAVYHEKVSRVSGFTPGES
SGKDSKPSQSGLMSKKTKAKGSIFRPRLAFGKEKTSRR
NT seq
5697 nt
NT seq
+upstream
nt +downstream
nt
atgaagaactcccacgtggaactcgatctcgactcgtttctagtatccgactccgactcc
gaacccgattcggatccttcctccgttccccaccgtacaatcgacgaaatcctcaacgcc
tccagctcttcatctccctcttcttctccaccaccatctccgccgttactcagagagcag
cttaaccgccggaatcaaaacgatccgagtcgccgccctcaatctgaattacttcgcgga
ttccccagcgtaaccgatccggcgcggcggaatccggcgccgtctacttcattgaggcag
ttgccgttgccgtcgctgttcgcgggagtgaggtccaatgtgaagcccggcgcggcgctt
gcggcggctgtggctgcttccagattggtgcctacgccgcacgccgctatcatcaagtcg
aggagagctagtagtgccagtagcgagttgcttttgagcggcgctggagaatctagttcg
aatcaagatgaagatgatcacgaagttttatcatcaaatggtgattctgctggaattgag
aatccttcttttgatagagaatctcgcttagaggatgaggatgatggagttgtagttgca
agtcaagataacgaagctaaagtaatggaagttcaagctagtgatattgatgattatgag
aaaaactcaaagcctgacttagtaacttcctcctctggtgttgatgttgaagaagaagtc
tctacagaacaagaggggatggccgcaacggaagcaggagatgctgacgcaatgcttgta
gctccttctgcggagtctttagagtctcaaaatttgaatgaaaattctgatgatgttaag
gtaagtaatgatgaggagtcaagtgatggcgatgttaataagaatgatgctaaagaagag
gagggaggtgatgatgcttttattcctgatgatggaagctcagtgtccggcatttcggag
cttgtagaagagaggattgaggagatggaaaaagagaggatgagtaaaagggagaagcta
aagtcacgatcttttaggaagcagcttgtcttggctgaagagtttgagaagaaacaagca
tatactggtttgcattgggaggaaggagctgctgctcagccaatgagacttgagggtgtt
aagattggttcgacgaatctaggttactttgatgttgatactagcaatatcatcagccga
acgatttcatcgcaggcatttaagcgagaccatggttctcctcaggttttggctgttcat
ttgaattttattgcggtgggtacgtccaagggggtcatcgtcgttgtacctagtaaatat
tcttctgatactgcagatcagatggaatcaaagatgatttggcttggtttacaaggagaa
agatcgcattctccggttacctcagtttgcttcaatcagcaagggggactcctgctagct
gggtatggtgatggacatgttacagtttgggacgtgcagagagcgtcggcagcaaaagtg
atcaccgaacacactgcaccagtagtatatgcgttttttctaggccgggattctcaaggc
tctcgcatattcaaagtaattacaagtgacaataagggtgttgttttcaaacatactttc
tcctggactctgctgttgaatatgtatacagtaaaaacgcagtgtcttctcgatggacaa
aaaaatggaatggtcctatcggcatcacctcttcctgatgaatattttggaagctccttg
gcctcttctaaggcgggtaacactgcaactccatccagcagtataagcagcatggtgggg
ggtgttgttggggttgattcaagttggaagctctttaatgaggattcgtcagcggtggaa
gaaggggttgtcgtatttgtaacctatcaaactgtactggtggtaaagctcattccagat
ctggaggtgtatgcacaacttcctaggcctgaaggggttcgggagggttccatgccatac
acggcctggaaatgttcaatggaaaactcttctaaggaggctaaagatagggtttcgttt
cttgccattgcctgggatcgtagagttcaggttgccaagttggtaaaatcaaaattaaag
gaatgtgccaaatggtcgcttgacagtgctgctattggtgtggtttggctggacgatcag
ttgctggtgatcccaactgtgacgggccatttatatctgttcacaagagatggtgtggta
attcaccagacaagcttttctgtggatggttcttcagggaatgacctgatttcttatcat
acgtactttacaaacgtctttggaaatcctgagaaagcttatcacaactctgtgggtgtc
agaggggcttcagtatacattctcgggactgcacgtcttgttatctccagacttttgcca
tggaaggagcgggttgatgttttaaggagaggaggtgactggatgggtgcttttaacatg
gcaatgtcactttttaatgggcaagctcatggagttgttgacctccccaaaactgtggac
gccataagggaagcaatagcacccagtttagcagagttgctacgttcctatgtagatgaa
gtattttcttatatcacaatagcattttccagtcagattgaaaagaatggagtaactaat
gagccaagcagtggaaccaataatgtcaatttagagatagaagaacaatacaatcgtgtt
ggtggtgttgccgttgaattctgtgttcatattaacaggatggatttgctcttcgatgag
atattttccagatttgtggctgtacaacaaagagatacatttttggagcttttggagcct
tatattctaaaggatatgcttggatcgcttcctccagagactatgcaagctctggtagaa
cattatagtaggaaaggatggctacaaagaattgagcagtgtgttcttcacatggatatt
tcttccttagatttcaatcaggttgtcagaatttgccgtgagcatgggctttatggggcc
ttactctatcttttcaacaaagggttggatgatttcaggtcacctctggaggagcttttg
attgtcttccggaacagtgagagacaaaggtctacagccattgggtaccgaatgcttgtt
tatctaaagtactgctttcttggtttggcttttccaccagggcatggaaccctggttcct
acgcgcttaccatcccttaggactgagttgattcagtttctactggagaaatcaaactcc
cacgaatctagtagatgtgtatcatctccacggatttacttgaacctctaccatctgcta
gagttggatactgaagccactttagatgtcctaagatatgcatttgcagaaagtgaaatg
gtagatcatgagacccttttgctggagtctggtgaagtaagtttcgagtccaagaccgat
ggcagtatcccggaagatagatgtaacgatatgttgatccagaatgtgatagaggcccta
gttcatattattgatgggggctttagtcaacttgatgaatctggggatccagatgattca
aaatcagataaaaagtggccctctaaggaagatacgagtcatctatttgagtttgttgca
tattatgcagcacgtggaagagctagtattcccaagagcgtattggcacagattttagac
tacttaacatcagatcacattcttccgacttataacatgtctcctaaaatgagagagaac
caatttctaaaccttctgcaagccgtaccggtgactgattgggatgtagcttatgtatct
cagctttgtgagaaggcacatttttatcaggtctgtggctatattcatactattggtcga
cggtacgttgctgctttagaaagctacatgaaagaggaagaggaacccatacattcgttt
tgctatgtgaacaagatgctttcgcagttgaatgggaatgaattcacagcttttcaatct
gcagtaattgataggattcctgagctccttgaattgagcagagagggaacattcttcctg
atcattgataatctgaaagacaacatcacacgcattcaagagcagctccattctcatcca
agaagcatgttcctttatctcaagactgtcatcgaggtttacttgtctgggagtcttgat
ttttctcgtctaagaaaacatgaagcggtggacagtttgggtgaaaacactagaaggaat
atacccaaagaggctgagctttatttggaaggacttaatggctttcccaaattcattcaa
gataatccagtcaatgtgactgatgacatgattgagctttacttggagctattatgcaag
tatgaaccgaagtcagtcttgagattcctcgaaacgtttgacaactacagggtggaacac
tgtctacgcctctgccagaaatatggaattgcagatgcagcagcatttctcttggagagg
gtcggtgatgcagcaagtgctttgtcacttacactctctggactcagtgaaaattttgtc
gcgcttgaaaacgcagtggcttgcctaatatcagaactaaagttgggtgctagcgaagta
gccaccttggaacaatccaacagcgctctagagttgaaggaggtaaatgacatacaaggt
gttctgcaagcctgtataggattgtgccaacgcaacactcctcgccttaatcctgaagag
tcagagattctttggtttcgctttcttgacactttctcagagcctttgatggattcatat
cgggaaccaaggactgtcgatgaaataaacaaaggcacttccagcgttaaatcattggaa
ctgtgtgtagatgaagcagttgacacaatcaagtggaggattccgcgatctaatgtcgcc
ggtacacatatcctgaggaagctcatgtctcagtttatcaaagagattgttgaaggaatg
ataggatacgttcgtcttccaacaatcatgtcaaaacttctttctgacaacggtactcaa
gagtttggtgatttcaagcttacaatactgggaatgcttggaacatatggcttcgagcgg
agaatactggatactgcaaagtctttaatcgaagaggatacattctacaccatgagttta
ctcaagaaaggtgcttctcaaggttacgcacccagaagtttgctttgctgtatatgcaat
tgtcctctcaccaagacgttctctactcttcgtgtacgtgttttcaactgtggccacgca
acgcatctgcaatgtgaagtgtcggagagtgaaacatcttcatcaggttgtcctgtttgt
atgaccaagaagaccacacagagttcatcaaaaggtaaatcattctacttagactatgga
ctgataagcacagtttcttcaaacaccggcacttcacaacgcgcttcgccttactcttat
gagaatgaaatgatcgatcattctcatagccagcaaatatcacgatttgaaatgctaacc
aagctacagaaagatcagagactggtacagatagaaagcttgcctcgattaaagctgtca
cctcctgctgtgtaccacgagaaagtgagcagagtctcgggttttacaccgggagagagc
agcggtaaagactcgaaaccatcccaaagtggactgatgagtaagaaaacgaaagcaaaa
ggatctatctttcggccaagacttgcttttggaaaggagaagacgagcagaagataa
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integrated database retrieval system
