Brassica napus (rape): 106436830
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Entry
106436830 CDS
T04128
Name
(RefSeq) protein RRP6-like 1 isoform X2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106436830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106436830
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
106436830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-GeneID:
106436830
NCBI-ProteinID:
XP_013733232
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Position
C1:complement(29107594..29111988)
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AA seq
698 aa
AA seq
DB search
MAADDSPGLKSLEALIGGSLPENLSKLSSTCLAIPANKDFHFLCNFDEFKLRIDEISGSS
QCVLETIGGFCRKPMRYSGDVVGDDAYDWLVNLNDEVLQRIDLDLEDTMKKETDSKHGKA
KVSFHIATIKKPQEEYKILVNNANVPFEHVWLEKKENNLGFIHPLEKLSVMDFVDKDISE
MKPVEPLSLEGIPFKLVEEINDLKDLAAKLSSVDEFAVDLEHNQYRSFQGLTCLMQISTR
TEDYIVDTFKLWDHVGTYLRDIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQAS
RVLKLERKSLEFLLKHYCGVAANKQYQNADWRIRPLPDVMTRYAREDTHYLLYIYDVMRV
DLHTVAKEDEKPDSPLVEVYKRSYDVCMQLYEKELLTENSYLHIYGVQAANFNAVQLAIV
AGLCEWQDRIARADDESTGYVLPNKTLLEIAKEMPINVGKLRRLFKSKLPYIERNVDAVI
SVIRRSMQNAAAFEPVVQSLKTWHPGTVFENNIESTVEETCTEAVVASSLSSKKFLQVEN
DIGGVRTTVSHGSGKVSVDVSEEQSGGFGALPSKRKFGNENKANEEVKVSKSKPACVSKP
DEVIILSDDNDEYGEETSEPEDAADSVSETPFKGPDVSINVKTFGPDIIVLDDDDSDDDD
SDNDSEAGDGREREVERMNKISEQQGKFMSLKPGFLNI
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggcagccgacgattccccggggctgaaatctctggaggcgttgattggtggttctctc
ccggagaatctctcgaagctatcttctacttgtcttgcaattccagcgaataaggatttc
cattttctctgcaatttcgatgagttcaagcttcggattgatgagatttcagggagctcg
cagtgtgttcttgagacgatcggtggcttctgtcggaaaccgatgagatattcaggggat
gttgtaggagatgatgcgtatgactggcttgttaacctgaacgatgaagttctccagaga
attgatttggatttggaagacacaatgaagaaggaaactgattcgaaacatggaaaggca
aaggtttcgtttcatatagcaacgataaagaagcctcaggaggagtataagattttggtg
aacaacgcaaatgtaccgtttgagcatgtttggttggagaagaaggagaacaatctaggc
tttattcatccactggagaaactttcagtgatggactttgttgataaagatatatcagag
atgaaacctgttgaacccctctctttggaaggaattccattcaagcttgttgaagaaatc
aatgatctgaaggatttagctgcgaaattgtctagtgttgatgagtttgctgttgatctg
gagcataatcagtataggtcttttcaaggattaacatgcttgatgcaaatatctaccaga
acggaggattatatagtcgatacattcaagctttgggatcacgttggtacatatctcagg
gatatcttcaaagaccctaaaaagaaaaaggttatgcatggagcagatcgagatattatt
tggcttcaacgtgacttcggcatatatgtttgcaatctctttgacacaggacaggcctca
agggtgctaaagctggagagaaagagtcttgaatttcttctgaaacattattgtggagtt
gctgcaaataaacaataccaaaatgcagactggagaatacgaccccttccagatgtaatg
acaagatatgctagagaagatacacattatcttttgtatatttatgatgtaatgcgagta
gatttgcacacggtagcaaaagaagacgagaaacctgactcccctctggtagaggtttat
aagcgcagctatgatgtgtgcatgcaactatatgagaaagagcttctgactgagaattca
tatcttcacatttatggggttcaggcagctaatttcaatgcggttcaacttgccattgtt
gcggggctttgtgaatggcaagatcggattgcacgagcagacgatgagagcactggttat
gtattaccaaacaaaactcttcttgaaatagcgaaagagatgccaattaatgtgggaaag
ttgcgacggttgtttaagtcaaagcttccttacatcgagcgtaatgttgacgcggtgatc
agtgtcatcaggcgatcaatgcaaaatgcagcggcgttcgagccagttgttcaatcctta
aaaacatggcatcctggaacggtctttgagaataatattgaaagcaccgttgaggaaaca
tgcacagaagctgttgtagcttcttctctgagttcaaagaagtttttgcaggttgaaaat
gacatcgggggcgtcaggaccacagtctcgcatggttcaggaaaggttagtgtggatgtt
tcggaggaacaaagcggtggttttggagctttgccttcaaagaggaagtttggaaatgag
aacaaggcaaatgaagaggtcaaagtgtccaagtcaaagccagcatgtgtctctaagcca
gatgaggtaattattctatcggatgacaatgatgagtatggtgaagaaacatcggaaccc
gaagatgcggcggatagtgtttcagaaacgccttttaagggaccggatgtatcaattaac
gtgaagacatttggtccggatattatcgtgttagatgatgatgactcagatgatgatgac
tcggataatgactcagaagctggagatggtagggaaagggaagttgaaaggatgaataag
ataagtgaacagcaggggaaattcatgagtttgaaaccgggctttctcaacatttag
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