Brassica napus (rape): 106437596
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Entry
106437596 CDS
T04128
Name
(RefSeq) putative tRNA pseudouridine synthase isoform X1
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bna03016
]
106437596
Enzymes [BR:
bna01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
106437596
Transfer RNA biogenesis [BR:
bna03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
106437596
Prokaryotic type
106437596
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
106437596
NCBI-ProteinID:
XP_013733957
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All DBs
Position
A3:complement(7218435..7220439)
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AA seq
498 aa
AA seq
DB search
MAAVSFLRYSVPSRVFWYPTRLIRVTPTFARFSSSAASTPSDHSLPDKWESYRKKKVVIR
IGYVGTDYRGLQIQRDDPSLKTIEGELEVAIYKAGGILESNYGDLHKIGWARSSRTDKGV
HSLATTISLKMEIPETAWKDDPHGTALAKCISKHLPDNIRVFSVLPSQRRFDPRRECTLR
MYSYLLPVDVIGVKNSFSSDEIDHHLSDFNEILKQFEGDYPFHNYTQRSKYRRKAQHKIT
QRNGRPPKKPKSIQASESNEEEKVEVVEVEEEEAGGEESNEDVADSQAYIRAKWLHEPDE
TDKLSAAHFRKVFRCSCGNLESSLGFGFVEISIWGESFMLHQIRKMIGTAVAVKRELLPR
DIIRLSLNKFTRIVLPLAPSEVLILRGNSFEVPKSPANFRRRPEIKAMGESEEVEREVEE
FYRGVMVPQVSRFLDSEEAPWKEWLEHLERNDGMIDEQLEDVRRGWEEWKAKPRVMTRMT
EGDKEFGSVSVPVHQAMH
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagtctcgtttctacgatactcagttccttcgcgggtcttctggtacccgacc
cggctcatccgggtcacacccactttcgcgcgattctcttcctccgccgcctctactccc
tccgaccactccctccccgataaatgggaatcttatcgaaagaagaaagtggtcatccga
attggctacgtgggcaccgattacagaggcctacagattcaaagagacgacccttctctc
aaaactattgaaggtgaacttgaggttgctatatacaaggctggtggaattctagagagt
aactatggcgatcttcacaagattggttgggctagaagtagccgaaccgataaaggagtt
cattctctggcaacaacaatatcattgaagatggagatacctgagactgcgtggaaggat
gatcctcacggcactgctcttgctaaatgcattagcaaacatcttcctgacaacatcaga
gtcttcagcgttttgccctcgcaaaggagatttgatccacgaagggagtgtacgcttcgg
atgtattcttacctccttcctgttgatgttattggggtcaagaatagcttttcttcagat
gagattgaccatcacctttcagatttcaacgagattttgaaacagtttgagggtgactat
cctttccataactatacgcaacggtcaaagtacagaaggaaagcacaacataagatcaca
caaagaaacggacgccctccaaagaaaccaaaatcaatccaagcatcagagtctaatgaa
gaagaaaaagttgaagttgtagaagttgaagaagaagaagcaggtggtgaagaatctaat
gaagatgttgctgattctcaggcctacattcgtgcaaaatggctgcatgagccagatgaa
acggataagctgagtgcagctcatttcagaaaagtgtttagatgcagttgcggaaacctg
gagagttcactaggattcggctttgttgagatctccatatggggagaatcattcatgtta
catcagatccggaagatgattggaacagctgtggcggtgaagagagagctgcttccaaga
gacatcataagactatctctcaacaagttcacaagaatcgttttgcctcttgctccatct
gaagtactgatcctcagaggaaacagcttcgaagtgcctaaatcgcctgcgaatttccgg
aggaggccggagataaaagcaatgggggaatcagaagaagtggagagagaagtggaggag
ttttacagaggggtgatggttccacaggtgagtagattcttggattcggaggaagctccg
tggaaagagtggcttgagcatttggagaggaacgatggtatgattgatgagcagttggaa
gatgtgagaagaggttgggaggagtggaaagcaaagccaagggttatgacgaggatgaca
gaaggtgataaagagtttggttctgtttcagtacctgttcatcaagctatgcattag
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