Brassica napus (rape): 106437814
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Entry
106437814 CDS
T04128
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 2
KO
K15172
transcription elongation factor SPT5
Organism
bna
Brassica napus (rape)
Pathway
bna03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
106437814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106437814
03019 Messenger RNA biogenesis [BR:
bna03019
]
106437814
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
106437814
RNA polymerase I system
106437814
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
106437814
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW
Spt5-NGN
KOW4_SPT5
KOW7_SPT5
KOW2_Spt5
KOW6_SPT51-2
KOWx_SPT5
KOW5_SPT5
GPKOW_C
Spt5_N
DUF150_C
DUF4438
Motif
Other DBs
NCBI-GeneID:
106437814
NCBI-ProteinID:
XP_013734255
LinkDB
All DBs
Position
A3:8216798..8222223
Genome browser
AA seq
1012 aa
AA seq
DB search
MAHHSDSDDEDYSYDDESEFDEEEEEEPRSSRKKRGRSNPDSVPGGARGKKRKPSGSIFI
EDDVIVDDEEDNDDDVEDGFIEHGEADLGAEDVVGRRHRHFHEPAAFRSRVGAEEYLDFM
QEKYSNPRAEYDDDDDYEDEEAVTEVDQQSLLPSVRDPKLWMVKCAIGREREVAVCLMQK
AVDRGSDFKIKSVIALDHLQNFIYIEADMEAHVKEAIKGMRNIFANHKILLVPIREMADV
LSVRSKTLELARDTWVRMKLGIYKGDLAQVVDVDDVRRRVTVKLIPRIDLQLLADKQEGS
VIVKKKAFVPPPRFMNVDEARELHIRVERRRDRMTGDYFENIGNMLFKDGFLYKKVSTKS
ISTLNVTPTFDELERFKKANENGEIDFVDMSTLFANRKKGHFMKGDEVIVIKGDLKNMKG
WVERVDEENVLIRSEMKGLNNPLAVNERELCKYFEPGNHVKVVSGTHKEATGMVVKVDQH
VLFLLTDTTKQQIRVFADHVVKSAEVTNGVTKMGEYELHDLVLLSNLSFGVIIKLDNEAI
QVLKGVPGRPELAIVKHGEIKYKIEKKTTVKDRYKNVMTVKDVVRVTEGPSKGKQGPVMH
IYKGVLFLHDRHNVEHAGFVCVKCSSCVLSGGSYSGADRIVDSFSRLANSKPPAPVPPSP
RRFQRADLGYNSGSGGRHWSGRGGRGNDLLVGAYVRVRLGPYKGYRGRIVEVKEKTVRLE
HEAKIVTVNRDAIADGNDNVATPSQYNMGSQTPMHPSRTPLHPCMTPMRDSGGLLPSATP
IHSGMRTPMRDRAWNPYTPMSPPRDSWEDGNPGSWGTNSLYPPESPYSRPHEAATPGSGW
DSSTPGRSYSDAGTPRDANVPSPYQPMTPSSASYLPSTPGGQPMTPGADLDVKSPDIGGD
AETWLMPGILVSVHKAGGDSHAGVIRDVLPDGSCLIARGDRGEGETVMAIQSEVRLVCPR
KNERVKVVGGKHRGSLAKLIGLDGSDGIVKLDDTLDVKILDLGLLAKLAMRD
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atggctcaccactcagactccgacgacgaagactactcctacgacgatgagtccgagttc
gacgaggaagaagaagaagaaccgagaagttcacggaagaagaggggaagatcaaaccca
gactccgtccccggcggcgcgcgtgggaagaaaagaaagccttcgggctccatattcata
gaggatgacgtcatcgtagatgacgaagaagacaacgacgacgacgtcgaggacggtttc
attgagcatggtgaagccgaccttggtgctgaggatgttgttggtcgtcgtcacaggcat
tttcacgaaccggcggcgtttcgttcccgtgtgggtgctgaagagtatcttgatttcatg
caagagaagtattctaaccctcgtgctgaatatgacgatgatgatgattatgaagatgaa
gaagccgttaccgaggttgatcaacaatctcttttgccatcagtccgtgacccgaagctg
tggatggtgaaatgtgcgattggtcgtgaaagagaggttgctgtttgtctaatgcaaaaa
gccgtggatagaggatcagatttcaagatcaaatctgttattgcgcttgatcatcttcag
aactttatatacattgaagcggatatggaagctcacgttaaagaggctatcaagggcatg
cggaatatctttgcaaatcataagattttacttgttccgataagagaaatggcagatgtt
ctttctgtaaggagtaagacacttgagctagcgcgtgacacatgggttagaatgaaactt
gggatatataagggtgatctagctcaggttgttgatgttgatgatgtgcgtaggagggtc
acagtcaagttaatcccaagaattgatctgcagcttctagccgataagcaggaaggaagt
gtgattgtgaagaagaaagcttttgttccacctccacgcttcatgaacgtggatgaggca
agggaacttcacatacgcgttgagcgccgacgtgaccggatgacgggtgattactttgaa
aacatcggtaacatgcttttcaaagatggcttcctgtacaagaaagtatcgaccaagtcg
atttctactctgaacgttacaccgaccttcgatgagcttgagaggtttaagaaagcaaac
gaaaacggggagatcgactttgttgatatgtcaactttatttgcgaataggaaaaagggt
catttcatgaaaggcgatgaggttattgtgatcaagggagatttaaaaaatatgaagggt
tgggttgagagagtagacgaagagaatgttcttatcagatcagagatgaaaggtcttaat
aatcctcttgctgtaaacgagagagagctttgcaagtactttgaacctgggaatcatgtg
aaggttgtttctggcacccataaagaagcaaccggcatggttgtcaaagttgatcagcat
gtgcttttccttctaactgatacgaccaagcaacagattcgtgtcttcgctgatcacgtc
gtgaagagtgcagaagtgactaatggtgtcacaaaaatgggagagtatgagcttcatgat
cttgtgcttctaagcaacttgagctttggagttatcataaaacttgataatgaagctatc
caggttcttaaaggggttcctggaagaccggagctagctattgtcaaacacggggaaata
aagtacaagattgagaagaagaccactgtgaaagaccgttacaaaaatgttatgacggtt
aaagatgttgtcagggtcactgagggtcctagcaaaggtaaacaaggtccagtgatgcac
atctacaaaggagtgttgtttttacatgaccggcataacgttgagcacgctggatttgtc
tgcgttaaatgctcatcttgtgttctttccggtggatcatattctggcgctgacagaatt
gttgattctttctcaaggttggccaattccaagccaccagcccctgtgcctccatctcca
agaagatttcaacgggcagacttgggatataactctggatctggaggaagacattggagt
ggaagaggaggaaggggtaacgaccttttggtaggtgcttatgtgagagttcgtctgggg
ccttacaagggatatagaggtcgcatagtagaagtcaaagagaagacagtgcgtttggaa
cacgaggcaaagattgtgacagttaatagggacgcgatagcagatgggaatgataacgta
gcgacaccctctcagtataatatggggagccaaactcctatgcatccttcccggactcca
cttcatccttgtatgactccaatgcgggattctggaggtttgttaccttcagctacacct
atccatagtggaatgaggacacccatgcgtgatagagcttggaatccttacacgcctatg
agtcctcctcgggatagctgggaagatggaaacccaggatcatggggaacaaattcactg
tatccgccggagagtccttattcgcggccacatgaagcagctacgcctggatcagggtgg
gatagtagcactcctggtcgtagttatagtgatgctggaacaccaagagatgctaatgtc
ccaagtccttatcaacctatgacaccaagctcggcttcctacctacctagcacccctgga
ggacaaccaatgactcctggagctgatctcgatgtcaagtctcctgatataggtggggac
gcagaaacatggttgatgcctggtattttggtcagtgtacacaaggccggaggagatagc
catgcgggagtcatccgagatgttcttccggatgggtcctgtctaatcgctcgtggagac
agaggtgaaggcgaaactgttatggcgatacagagcgaagtgaggttagtttgtccgagg
aagaacgagcgagtgaaggttgtaggaggcaagcatcgtggttcattagctaagctcatt
ggtctggacggatctgacggtatagtcaagctagatgacactctcgacgtcaagattcta
gacctgggtttattagccaagctagccatgcgtgactga
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