Brassica napus (rape): 106438276
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Entry
106438276 CDS
T04128
Name
(RefSeq) protein SUPPRESSOR OF PHYA-105 1-like isoform X1
KO
K16240
protein suppressor of PHYA-105 1 and protein SPA1-related 2
Organism
bna
Brassica napus (rape)
Pathway
bna04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
106438276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bna04121
]
106438276
Ubiquitin system [BR:
bna04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Multi subunit type E3 associated proteins
106438276
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_C
EIF3I
Beta-prop_RIG_2nd
Pkinase
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_CAF1B_HIR1
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_NUP159_NUP214
WD40_RFWD3
PK_Tyr_Ser-Thr
WD40_like
Motif
Other DBs
NCBI-GeneID:
106438276
NCBI-ProteinID:
XP_048631817
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Position
A3:complement(11455237..11459701)
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AA seq
951 aa
AA seq
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MEAVLIGEEAVESSNLQFKGRVDDVPCTGSSADMKNVVDDINKPPVEESVGASSKICVEE
LRLVNNRIVNVDSSSSSSSSRAGKFEHVYNNNLARGSPPAFRLGDGDVDSHMLSRIRQQL
AGASSERLNYINRRSHQNLEAFSQRLRAAGDNSINMNAPALSSSSFLSAMKGENQETPPD
FVSGQDCQENKLDNSKSPIPGNSSHKGHGDGISLREFLRSSYGKRERRHGLSLFRQLVEL
VDSAHSQGLFLMDLRPSLFALVPSKKLRYTGTFGKNNGDEEVNRKRPGTQESSVMGRDLK
KRKMDLEAPSTGRPFERISPVIDLNVVDAYNPDSCELQQQNYRKSLGVASMTRRKQSMST
WLEEQWYTCPEEINGEDSGEKSNIYALGVLLFELLCHCESSEMHAAMMADLRHRILPPAF
LSKYPEEAGFCLWLLHPEPSSRPTAREILNSELISKNDSAISTAADEEMSELLLHFLSSL
EKQKKKNATKLLQDIQTLEDDIKEAEQRYSSNASLVRSHGAIETRVQSSPLDERCTTSSG
ALFAPTANTDRLMMSNIRQLEDAYFFMRSQMKLSNSASRSDKSLLKDRWSENQNENQETK
TKGKSSDQVEVFFEGVCKFARYSKFETCGTIRSGDLLNSTASVVCSLSFDAEEEHIAAAG
ISKKIKIFDFNAFMNESVGVQYPLVEMVSKSKLSCVCWNNYIKNYLASTDYDGVVQIWDA
GTGQGFSQYTEHQKRAWSVDFSPSDPTKFVSGSDDCSVKLWSVNEKRSLGTIWSPANVCC
VQFSAYSNHLLAFGSADYKVYCYDLRYVRTPWCTLSGHEKTVSYVKFMDSETIVSASTDN
SLKLWNLNKTGLSPGACPLTYKGHTNQKNFVGLSVLDGYIACGSETNEVYSYYKSLPMPM
TSYKFGAVDPISGNECFDDNAQFVSSVCWKKKSNMLVAANSTGNMKLLKLV
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtgttgatcggtgaagaagctgtggagagtagcaacttacaattcaaagga
agagtggatgatgttccttgtacaggaagctcagctgacatgaagaatgttgttgatgat
atcaacaagcctccggtggaagaatctgtaggagcttcttctaagatctgtgttgaagag
ctcagattggtgaataataggatagttaatgtagatagttctagttctagttctagttct
agggctgggaagtttgagcatgtatataataataatcttgctagaggctctcctcctgcg
tttaggctaggagatggagatgttgattctcatatgctgtctagaatcagacaacagctt
gcgggagcttcttctgaaaggctaaactatatcaataggaggagccatcagaatcttgaa
gcgttttctcaacgtcttagagcagctggagataacagcattaatatgaacgcacctgca
ttgagttcttccagtttcctgagtgctatgaagggggaaaaccaagaaactcctcctgac
tttgtctctggccaagattgccaggaaaacaagttggataatagcaagtctcctatccca
ggaaattcaagtcacaaaggacatggtgatggaatcagtttgagggagtttcttagatca
agttatggtaaacgagagagacggcatggcctttctctatttaggcagctggtggagctg
gttgactcagcccattcgcaaggattattcttgatggacttgagaccatcccttttcgct
ttggtcccttccaagaaacttaggtatactggtacgttcggaaagaacaacggtgacgaa
gaggtgaataggaagaggccggggactcaggaatcatctgttatgggtagggatttgaag
aaaagaaaaatggaccttgaggctccttcaactgggagacctttcgaaaggatcagccct
gtgattgatttgaacgtggttgatgcatataatccagacagttgtgaacttcaacagcaa
aactatagaaaaagtttaggagtggcatcgatgacgaggagaaaacagtctatgtccaca
tggcttgaagagcaatggtatacttgtccagaggagataaatggagaagactccggagaa
aaatcaaacatatatgcccttggtgttcttctgtttgagttgctatgtcattgcgagtcc
agtgagatgcatgctgcaatgatggcagatttacgtcatcggattctcccaccagcattt
ctctccaaatatcctgaggaagctggattttgtctttggctactacatccggaaccctcc
tcgagaccaacagctagagaaatactaaattctgagttgatatccaagaatgattcggcg
atatcgactgctgctgatgaggagatgtctgagctgttacttcattttttgtcttcacta
gaaaagcagaagaagaaaaatgcaactaagcttttgcaagacatccagaccttggaggat
gatattaaggaagccgagcaaagatattcttcaaatgcatctctggtgagatctcatgga
gctattgaaacaagagtgcaatcatctcccctagacgagcgctgtacaacttcttctggc
gccttgtttgcaccaactgctaatactgacaggctgatgatgagtaatatccgtcaactt
gaagatgcatatttcttcatgagatcacaaatgaagttatccaattccgcctcccgttct
gacaaaagccttctaaaggacaggtggtctgaaaaccaaaatgagaatcaggaaacgaaa
accaaaggaaaatcttcagatcaagtggaagtgtttttcgagggggtgtgcaaatttgct
cggtatagcaagtttgaaacctgtgggacaataagaagtggagatcttttaaactctact
gctagtgtggtatgctcattgagttttgacgctgaagaggaacacatagcagccgctggg
atatcaaagaaaatcaagatttttgacttcaatgcgtttatgaatgaatctgtcggtgtt
caatatccactagttgagatggtcagcaaatccaaattaagctgtgtttgctggaataat
tacatcaaaaactacttagcctcgactgactacgatggtgtagttcagatatgggatgca
gggactggacaaggattctcccagtatacagaacatcagaagagagcctggtcagttgat
ttttctccatctgacccgacaaaatttgtcagtggaagtgatgactgttcggtaaagctt
tggagcgtcaatgagaaacgttcattaggcacaatctggagtccagctaacgtgtgttgc
gtgcaattctctgcatattccaatcacttattggcatttgggtcagctgattacaaggtc
tattgctatgatcttcggtacgtcagaactccttggtgcacattgtctggccatgagaaa
actgttagctatgttaaatttatggactcagaaaccattgtctctgcttccactgataac
tctctcaagctttggaatcttaacaagactggtttatctcctggtgcttgtccattgacg
tataaaggacatacaaatcaaaagaattttgttggattatcagttttggatggatacata
gcatgtggttcagagaccaatgaggtatatagttactataaatccttaccgatgccaatg
acttcatacaagtttggagctgtggatcccatttctggaaacgagtgcttcgatgacaat
gcgcagtttgtgtcgagcgtctgttggaaaaaaaagtcgaatatgcttgtagctgcgaat
tctactggaaacatgaagctactaaagctggtttga
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