Brassica napus (rape): 106438322
Help
Entry
106438322 CDS
T04128
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24-like
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106438322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106438322
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106438322
Spliceosome [BR:
bna03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
106438322
Complex B
106438322
Complex C
U2 SnRNP specific factors
106438322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
106438322
NCBI-ProteinID:
XP_048631828
LinkDB
All DBs
Position
A3:complement(11581763..11584609)
Genome browser
AA seq
737 aa
AA seq
DB search
MSIRNSTRFRGGDNSEDADVDNIDFTENEEDEEEDVDNGASAPANDEIDPLDAFMEGIHE
EMKAAPPPKPKEKVERYKDDEDDDHVVSFLKAKKDLGLTLAADALNAGYNSDEEVYAAAK
AVDAGMLEFDSDDNPIVVDKRKIEPIQALNHSSVDYEPINKDFYEEVESIASMSEQEALD
YRKSLGIRVSGFDVPKAVKTFEDCGFSSQIMSAIKKQAYEKPTTIQCQALPVVLSGRDVI
GIAKTGSGKTAAFVLPMIVHIMDQPELQREEGPIGVICAPTRELAHQIFLEAKKFSKAYG
LRVSAVYGGMGKHEQLKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFD
LGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEAGMANEDITQV
VSVIPSDAYKLPWLLEKLPGMIDEGDVLVFASKKATVDEIEAQLTLNGFKVAALHGDKDQ
ASRMETLQKFKSGIYHVLVATDVAARGLDIKSLKTVVNYDTAKDMDMHVHRIGRTGRAGD
KDGVAYTLVTQREARFAGELINSLVAAGQNVPPELMDLAMKDGRFKSKRDGRKGGGKKGG
GRGGGNRGVRGVDFGLGIGFNSESSGTSSQAAPSRSAAAPSRSAAAPSRKGVINSVRTGV
MAQFTNSFVAATPSNEAYPNKRPALTGFVSGGTIGGDMGRAQTQTPPVATSHHSSQKNTQ
SSEDRPRERKRRSGWDS
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgtctattcggaactctacgaggtttcgcggcggagataactcagaagatgccgatgta
gataacattgattttacagaaaacgaagaggatgaagaagaagacgttgacaacggcgcc
tctgcacctgctaacgacgagatcgatccactagacgcattcatggagggaatccacgag
gagatgaaggctgctccacctcccaagccaaaggagaaagtagagaggtacaaggacgac
gaagacgacgatcatgtcgtgagtttcctcaaggccaagaaggatttggggctcacgcta
gctgcggacgcgcttaacgcaggttacaactccgacgaggaggtgtatgctgcagctaag
gcagtagatgcggggatgctggagttcgattccgatgataatccgattgttgtggataaa
aggaagatcgagccgattcaagcgcttaatcatagttcagttgattacgaaccgatcaat
aaggacttctacgaggaggttgaatcaatagccagtatgagtgaacaagaagctttggat
tatcgtaagagtttggggattcgtgtgtcaggatttgatgttcctaaggcagtaaagacc
tttgaggattgtggtttctcctcacagatcatgagtgctatcaagaaacaagcttatgag
aaacccactaccatacagtgtcaagctttaccggttgtgctctctggtcgagatgttatt
ggcatagccaaaactggttcagggaagaccgcagcttttgttcttcccatgattgtgcat
atcatggatcagcctgagcttcagagagaagaaggtcctattggtgtcatatgtgcccca
accagagagctggcgcatcagatattcttggaagcgaagaaattctcgaaagcgtatggc
ctacgagtctcagctgtgtatggtggaatggggaaacatgagcagttgaaagaactcaag
gcgggatgcgagatagttgttgctactcctggaaggttgatagatatgctgaagatgaag
gctttgacaatgatgagagcctcgtatttggttcttgacgaggctgatcggatgtttgac
ctcggttttgagccgcaagtgaggtctatcgttggccagattcgtccagatcgccagact
ttactcttttcagccaccatgccttggaaagttgaaaagttagctagggagatcctttcg
gatcccattagagtcactgttggtgaagctgggatggccaatgaggatattacacaggtt
gtcagtgtgataccatcagatgcttacaaacttccttggctacttgagaagctacctgga
atgattgatgaaggtgatgtattggtttttgcgtctaaaaaagccacggttgatgagatc
gaagctcagctgactctgaatggttttaaagttgctgcccttcacggtgataaagaccaa
gcatcacgaatggaaacgttgcagaagttcaaatctggaatataccatgtgctagttgcc
accgatgttgctgcccgagggctcgacatcaaatcgctcaagacagtggttaactacgac
actgcaaaggacatggacatgcatgtacatcgtattggtagaacaggtcgtgctggtgac
aaagatggggttgcctacacacttgttacgcagagagaggctagatttgctggtgaactg
attaacagtctggttgctgctggtcagaatgtgcctccagaactcatggatctcgccatg
aaggatggacgattcaagtccaagcgtgacggaagaaaaggaggtgggaagaaaggtgga
ggacgaggtggtgggaatagaggagtacgaggagttgatttcggtcttggtattggattt
aactcagaatcaagtgggacatcgtctcaagctgctccaagtagaagcgctgctgcacca
agtagaagcgctgctgcaccaagtagaaagggggtgatcaattctgtgagaactggagta
atggcccaattcacgaatagctttgtggctgctacgccatcaaacgaagcttatccgaac
aagagaccagccctaacgggatttgtctcaggtgggaccattggtggggacatgggtaga
gctcaaactcaaactcccccagtagcaactagtcatcactcgagtcaaaagaatacacag
agttctgaagatcggccaagagagaggaaaaggagatctggttgggatagttga
DBGET
integrated database retrieval system
