Brassica napus (rape): 106438436
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Entry
106438436 CDS
T04128
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bna04131
]
106438436
Membrane trafficking [BR:
bna04131
]
Protein recycling
Others
EARP complex
106438436
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Xre_MbcA_ParS-like_N
Motif
Other DBs
NCBI-GeneID:
106438436
NCBI-ProteinID:
XP_048631858
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Position
A3:complement(11874628..11882647)
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AA seq
1124 aa
AA seq
DB search
MQPNLFPFGSVLGNPFLFNGGDLSEGGGGGGGGFESSRLFFLLPLLLSQGQGMDLSKVGE
KFLSSVKSASSLGLLPSPPSSSDRPQIPARAAAAAAVARALAALPPDQRLSISSTATELS
SIYGNRPPPQDVEELEQGFYEEDFDPVRHILENVPDDQSDLAYFEKQATLRLVQLDRVAE
SLSHHVMEHHEVMVKGMNLVRELEKDLKIANVICKNGRRNLTSSMNEASRDLIVHTHSKK
KQALLDMLPILTDLRHARVMQSSLEDLVEEGNYCKAFQVLSEYLQLLDSLSEFSAIQEMT
RGVEVWLGRTLHKLDSLLMGVCQEFKEDSYIMVLDAYALIGDVSGLAEKIQSFFMQEVIS
ETHSVLKTVVGEDNSAATQFSRLTYSDLCIQTPESKFRQCLLRTLAVLFQLIYSYHQIMS
FTPEMKVEDLISTSSATTQKIDSVTDTSCDPQGGGLSSTMSSASIPSSTISAEVSVESET
SSPVQQASNSAIDKSRDSGDTVSNGESPWSYLRKESAGFVSGTLQRGRRNLWQLTTSRVS
VLLSSPAASSTSIHQFLKNYEDLSVFILAGEAFCGFEVVDFREKLKAVCENYFTAFHRQS
MHALKMVLEKETWTRLPPDTVQAINFAGLVGDGAPLIISSRSASGSSRFPLSTDPSGNRS
GGFSYWLKSGNPFSAKLTYYREDQDYSSDSGAASEDQDYSSDVVNSKVRDRKGINGGSPV
SGDENEDLHADYIDEDSQLPRRSFTRSISRSSSSHLSTNDDLKAQTGSSLCLLRSMDKYA
RLMQKLELVNVEFFKGICQLFGVFFYFVYQVFGQENTNSGGKGVSNSSSHRLKSCLSRIS
QECEQWIKPQFSSSSPASSLAFPNTVHSLADVTPSSPLNTTSGHVSGISFSLKERCAAVD
TVSLVARILHKSKAHLQSMLMSRNGSLVEDFFGQLVGSVPDLTEHLHRTTARILLHVNGY
VDRIANSKWEVKELGVEHNGYVDLMLGEFKHYKTRLAHGGIPQEVQNLLLEYGVEIFAET
LVEGLSRIKRCTDEGRALMSLDIQVLINGLQHFVPTNVKPKLQIVDTFIKAYYLPETEYV
HWARGHPEYTKGQVVGLVTLVATMKGWKRKTRLEVVEKIESAAA
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgcagcctaatctcttcccattcggctctgttttgggtaatccgttcctattcaatggc
ggagatctaagcgagggtggtggtggtggtggtggtgggttcgagagctctaggcttttc
ttcttacttcctctcttgttgtcccaaggccaaggcatggatttatccaaggttggcgaa
aagttcctcagctctgttaagtccgcttcatcccttggactcttaccctctcctccttct
tcctctgatcgccctcagattccggcacgtgctgctgctgctgctgctgttgctcgtgct
ttggctgcccttcctcctgatcagaggttaagtatctcttccaccgctacagagcttagc
tccatatatggtaacaggcctcctcctcaagacgttgaagagcttgaacaaggcttctac
gaagaggattttgatccggtgagacatattttggagaatgtgcccgatgatcaaagtgat
ctagcttattttgagaagcaggccaccctgaggttagtacagctggatagagtggcagaa
agtctgtctcaccatgttatggagcatcatgaagtaatggtgaaggggatgaatttggtt
agagaactggaaaaagatttgaagattgcaaatgtcatctgcaagaatggaagaaggaat
ttgacttcttctatgaatgaggcttcaagagatcttattgtacacactcattccaaaaag
aagcaagctcttctggacatgcttcctatactaactgatcttcgccatgcaagagtaatg
cagtcaagtcttgaagaccttgttgaagaaggaaactattgcaaggcatttcaagttctg
tctgagtatttgcagcttcttgacagtctctctgagttttcagctatccaagagatgacc
cgtggtgttgaggtttggttaggaagaactctgcataagctggattcacttttgatgggc
gtttgccaggagttcaaagaagatagttatataatggtcctcgatgcttatgcactgatt
ggtgatgtctctggtcttgcggagaagatacaaagcttcttcatgcaagaagttatctca
gaaacccactcagtgctaaagactgttgttggggaggataacagtgcagccacccaattt
agtagacttacatacagcgatctatgtattcagacaccagaatccaagttcagacaatgt
cttttgagaacactagctgtgctatttcaattaatatattcgtaccatcagataatgagt
ttcactccagaaatgaaggtagaagatttgatctcaactagttctgcaacaacccaaaag
attgattcagtgacagacacctcatgcgacccacagggtggtggtctctcttcaaccatg
agttcagcaagcataccttcttctaccatttctgctgaagtgtctgttgaaagtgaaacc
tccagtcccgtgcagcaagcgtctaatagtgcaatagacaagtctagggattctggagat
acagtatctaatggcgagtcaccatggtcctatctacgaaaagagagtgctggttttgtt
tcaggaactctgcagagaggacgaagaaatctatggcaactcacaacaagccgtgtgtca
gttttgctctcatccccagctgcttcttcaacaagtatacatcagttccttaaaaactat
gaagacctgagcgtctttatccttgctggggaagcgttctgtggatttgaagttgttgac
tttagggagaagctaaaggctgtatgcgaaaattatttcactgcgtttcataggcaaagc
atgcatgcgcttaaaatggtcctggagaaggagacatggacgagattgccacctgataca
gtgcaagctataaattttgctggtcttgtgggggatggggctccccttattatttcttcc
cgaagtgcctctggttcttccagattccctctctcaactgatccgagtgggaacaggagt
ggtggattctcatattggctgaaaagtggaaaccctttctcagcaaagttaacttactat
agagaagatcaagactactcctcagacagtggagctgcctctgaagatcaagactactcc
tcagacgttgtgaattccaaggtaagagatagaaaaggcattaatggaggtagtcctgtt
tcaggagatgaaaatgaagaccttcatgctgactatattgatgaagatagtcagcttcca
agacgaagttttacacgtagtatatcaaggagttcttcttcacatttgagtactaatgat
gatttgaaagctcaaacaggatcgtcgctgtgccttctaagatcaatggataagtacgcg
aggcttatgcagaaacttgaactcgttaatgtcgaattctttaagggaatatgccaattg
tttggggtctttttctatttcgtgtatcaagtatttggtcaagagaatacaaattcaggt
ggaaaaggagtgtccaactcttccagccatcgtttgaaaagctgcttatcccggatatca
caagagtgtgagcaatggataaaacctcagttttcatcatcatctccagcttcttcactt
gcttttcccaacacagttcatagtcttgcggacgtgactccatcaagtcccttaaataca
acatctggtcacgtatcaggcatatcttttagtctcaaggaaagatgtgctgcagtggac
actgtttctcttgtggctcgaatattgcataaatcaaaggctcatcttcaatcgatgctt
atgtcaagaaatggctctttggttgaagacttctttggtcaactggttggttccgtacct
gatctgacagagcacttacacaggacaactgcgaggatcctgctgcatgttaatggatat
gttgaccggattgctaattctaaatgggaagtcaaggagcttggagtggagcataatggg
tatgttgatttgatgcttggggaattcaaacactacaaaacaaggcttgctcacggaggc
attccacaggaagtccaaaacctcctactggaatatggagttgaaatatttgcggagacg
ctggtggaaggtctatctcgaataaaaagatgcaccgatgaaggacgtgctctcatgtca
ttagatattcaggttctaataaacgggctacaacactttgtgccaacaaatgtgaaaccc
aagttacagatagtggacacatttatcaaggcatactatctaccagagacggagtatgtc
cactgggcaaggggtcatccggaatatacaaaaggacaggtcgtaggacttgtgacttta
gtagccaccatgaaaggctggaagaggaaaacgcggctagaagtagtggagaagattgaa
tcagctgctgcgtag
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integrated database retrieval system
