Brassica napus (rape): 106438601
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Entry
106438601 CDS
T04128
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106438601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106438601
03036 Chromosome and associated proteins [BR:
bna03036
]
106438601
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106438601
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
106438601
mRNA degradation factors
5'-3' decay
Decapping complex
106438601
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Gene silencing
piRNA pathway
106438601
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
TFIIA
CMS1
DUF6610
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
106438601
NCBI-ProteinID:
XP_013735282
LinkDB
All DBs
Position
A3:complement(14730697..14734539)
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AA seq
515 aa
AA seq
DB search
MMNNNNNNNRGGGGGRYPPGIGAGRGAINPNPNFQSRPGYQQQQQPQYVQRGGYSHQQQQ
FQQATSQPPRQYQQQQHQQQWLPRPQISTGNSNGGGGGDAVVEVEKTVLSDTNSEDWKAR
LKLPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRD
ILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQV
MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLAMDEADKLLSQEF
QPSVEHLISFLPQNRQILMFSATFPVTVKYFKDRFLTNPYIINLMDELTLKGITQFYAFV
EERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRV
FHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVN
LITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCQ
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacaacaacaacaacaataaccgaggaggaggaggaggaaggtaccctccaggg
attggcgctggccgtggtgccattaaccctaaccctaacttccagtcccggcctggctat
cagcagcagcagcagccgcagtacgttcagcgaggcggttactcccaccaacaacagcag
tttcagcaagccacgtctcagcctcctcgtcaataccagcagcagcaacatcagcagcaa
tggcttcctagaccccagatctctaccggtaacagtaacggaggaggaggaggagacgct
gtcgttgaagttgaaaaaactgttctctccgacacaaattcggaagactggaaagcgagg
ctaaaactacctgcacctgatactcgctacagaactgaggatgtgacagccactaaggga
aacgagtttgaagactattttctgaaacgagagcttttaatgggaatctatgagaagggt
tttgaaagaccttctcctattcaggaagagagtattcctatcgccttgactggtagagat
atccttgcccgagctaagaacggcactggcaagactgccgccttttgtatccctgtcttg
gaaaaaattgaccaagataacaacgttattcaagctgtgatcattgttccaactcgagag
ttagcccttcagacatcacaggtgtgtaaggagttggggaagcatttgaagattcaagtc
atggtcaccactggaggcaccagtctgaaagatgatatcatgcgtttgtatcagcctgtc
catttactcgtaggaactcctggaagaattttggatctcaccaagaaaggtgtttgcgtt
ttgaaagattgttctgtgctcgctatggatgaggctgataagcttttgtctcaagagttc
caaccttcagtggaacatttgatcagctttcttccccaaaatcgccagattttgatgttc
tcagccacgtttcctgtcactgtcaagtattttaaggatcggtttttgacgaatccttac
atcattaatctcatggatgaacttacgctcaagggtattacccaattctatgcttttgtt
gaagaacgacagaagattcattgcttgaatacactattctccaagctgcaaattaaccaa
tcgatcatattctgcaactccgtgaaccgtgtggagctcttagctaagaaaattacggag
cttggctattcatgcttttacatccatgcaaagatgcttcaagaccaccgaaacagagtg
ttccatgacttccgcaatggtgcatgccggaatcttgtgtgtactgacctgttcacacgt
gggattgacattcaagcagtcaatgtggtgataaactttgatttcccaaagaatgcagaa
acgtatcttcacagggttggtcgatcaggaaggtttggccatcttggtttagctgtgaat
cttatcacctatgaggaccgctttaacctctaccggattgagcaagagcttggaacggag
atcaagcaaattcctccacacatcgatcaggcaatttattgccaataa
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