Brassica napus (rape): 106438647
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Entry
106438647 CDS
T04128
Name
(RefSeq) tRNA:m(4)X modification enzyme TRM13 homolog
KO
K15446
tRNA:m4X modification enzyme [EC:
2.1.1.225
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bna03016
]
106438647
Enzymes [BR:
bna01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.225 tRNA:m4X modification enzyme
106438647
Transfer RNA biogenesis [BR:
bna03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
106438647
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TRM13
zf-TRM13_CCCH
Methyltransf_32
zf-U11-48K
Maf_flag10_N
Methyltransf_25
Methyltransf_31
Methyltransf_12
Methyltransf_11
MTS
Motif
Other DBs
NCBI-GeneID:
106438647
NCBI-ProteinID:
XP_013735345
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Position
C3:22188488..22190666
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AA seq
447 aa
AA seq
DB search
MAARSGSRCNFWLPKKKRSCANTRIESSLFCGNHSQRSDGQWLPCPIDPSHSVLQENLES
HVKRCPLLKQNVALSGQVFYQKGINAGNEEEEEKMGSCYSVVTSEMKRNLVYSMSVSEFH
QLIKKIEAVHCSIRNDIEDSHLSPEACNIWFNKEIDRKLPFQEKHVLQQGSILGNLEKIG
ALKRCNTNVECCEKDDDVPAVVEFGAGRGYLTQMLADCYGVKKVYLVERKSYKLKADRSL
RQKENLVLERMRIDIEDLNLNAVESLQGVSYVAVGKHLCGPATDLSLRCCLSRQDGESPV
LRGLAIATCCHHLCQWKSYINKEYIIGMGISKDEFHALTWFTSWAVDDDHGSKVPGVEGI
DLIASKEEEDGDKVEDDSLSSVEEVVKKMKPMKRAVLGFKCKQIIDAGRMKWVKKHGLDS
KLVKYIPASISPENTLLVAGKLSPVLA
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgagaagtggcagtcgatgcaatttctggcttccgaagaagaaaagatcatgc
gccaatactcgaatcgagagctccctgttttgtggaaaccatagccagagatcggatggt
cagtggcttccatgccctattgatccttctcactctgtgttgcaggagaatctcgaaagt
catgtaaagagatgtcctttgttgaaacagaacgttgcattgtctggtcaagtgttttat
caaaagggtattaatgctggaaacgaagaagaggaagaaaagatgggttcttgttactct
gttgttacatcagagatgaagaggaatctggtttatagcatgagtgtttctgagtttcat
cagcttatcaagaagattgaagcggttcattgcagtatacgtaatgatattgaagattcg
catttgtcacctgaagcttgtaacatatggtttaacaaggagatagataggaagttaccg
tttcaagagaaacatgttttgcaacaaggttctattctgggtaacttggaaaagattggg
gcattgaagagatgtaacacaaatgttgaatgttgtgaaaaagatgatgatgtgcctgcg
gttgttgaatttggagctgggagaggatacttaacgcagatgctagcagattgctatggc
gtcaaaaaagtttatttagtcgagaggaaatcttataagcttaaggctgataggtcactg
aggcaaaaggagaacttggtattagagcgtatgagaatcgatattgaagatttgaacctt
aacgcggtcgaatcattacaaggtgtttcttatgtggctgttgggaaacatctatgtggt
cctgcaacagatttgagcttaagatgttgtctgtctagacaagatggtgaaagccctgtt
ctaagaggtcttgctatcgcgacttgttgccatcatctttgccaatggaaaagctatata
aataaagaatatatcattggcatggggatttctaaagacgagttccatgccttgacttgg
ttcactagctgggcagtagatgatgatcatggttccaaagttcccggtgttgaaggcatt
gaccttattgcttcaaaggaggaggaagacggagacaaggtggaagatgattctttgagc
agcgttgaggaagttgtgaagaagatgaagcccatgaaaagagctgttttagggtttaag
tgcaagcagattatcgatgcagggaggatgaagtgggttaagaaacatgggttggattca
aagcttgtgaaatatattccggcaagcatctcaccggagaacactttactggtcgccgga
aagctaagtccggttcttgcttga
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