Brassica napus (rape): 106438841
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Entry
106438841 CDS
T04128
Name
(RefSeq) pseudouridylate synthase 1 homolog
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bna03016
]
106438841
Enzymes [BR:
bna01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
106438841
Transfer RNA biogenesis [BR:
bna03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
106438841
Prokaryotic type
106438841
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
106438841
NCBI-ProteinID:
XP_013735583
UniProt:
A0A816KJA7
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Position
C5:complement(11618130..11620019)
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AA seq
518 aa
AA seq
DB search
MENQEPKIEESLQDEAPDQEPEQKKLKISTEGDEPALSAAVSGKSGGAERRPPKYKRRKV
AIVFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPEADRNKPRQYEWARSARTDKGV
SAVGQVVSGRFYVDPPGFVERLNSNLPDQIRVFGFKRVAPSFSSKKFCDRRRYVYLIPVF
ALDPCSHSEAEMARSDSGYEYVKCVECCEKGYKIPLGVLGKESVDDETKSSEVQSDISSN
NCGALKVETNGEKTPNPESKEEMTKSEGKFCYGEKEKERFNRILSYYVGSHNFHNFTTRT
KAADPAANRYILSFNANTVITLDGKDFVKCEVVGQSFMLHQIRKMIGLAVAVMRNYAPES
VIQTAFKKDVRIVVPMAPEVGLYLDECFFTSYNKRFKVSHEEVSMEEYKEVAEEFKWKHV
YSHIGSAEDKDGIVAIWLHSLNERNYPDLRVAEHKPDEVIVYKKIDAASEEMINEEEAAV
KENANGAGELLVGSKVNDETSEEKNMEEGSRVEEKATE
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggagaatcaggagcccaaaatcgaggaatcgcttcaagacgaggctcctgatcaggaa
cctgagcagaagaagctcaagatctctaccgaaggcgatgaaccagctttgtcggctgcc
gtatccggcaaaagcggcggcgctgagcgtagaccgccgaaatacaaacgccggaaagtc
gccatcgtgtttgcgttctgcggggtagggtaccagggaatgcagaagaaccccggcgcg
aaaaccatcgaaggcgagctcgaggaggctctgttccacgccggcgccgtacccgaagcc
gatcggaacaagccacgacagtacgagtgggctcgatcggctcgaaccgataagggagtg
agcgcggtgggacaggtcgtctccggtcgcttctacgtcgacccgcctgggttcgttgag
cggctcaactcgaatctccccgatcagattcgtgtgtttgggttcaagcgcgtcgcgccg
tcgtttagctcgaagaagttctgcgatcggaggaggtatgtgtatctgattccagtgttc
gctcttgatccgtgctcgcatagtgaagctgagatggctagatcggattcgggatacgag
tatgtgaagtgtgttgagtgttgtgagaaagggtataagatcccacttggtgttttgggc
aaagaaagtgtcgatgatgagactaaatcatcagaggttcagtcagacatttcgtcgaac
aactgtggtgcattaaaggttgagactaacggagagaaaactccaaacccagaatctaag
gaagagatgacgaagagtgaaggcaagttttgttatggagagaaggagaaggagaggttt
aacagaatcctgagctattacgttggttcacataacttccacaacttcaccactagaacg
aaagcagcagacccagctgcgaaccgttacattctctccttcaatgcgaacacagtgatt
actctcgacgggaaagactttgtgaagtgtgaggttgtgggacagagcttcatgcttcat
cagatccggaaaatgattggacttgctgttgctgtcatgaggaactatgcacctgaatca
gtgattcaaaccgctttcaagaaggatgtgaggatagttgtaccgatggcgccagaagtt
ggactataccttgatgaatgcttcttcacatcttataacaaaaggtttaaagtcagtcac
gaggaggtgtcaatggaagagtacaaggaagtagctgaagaattcaaatggaagcatgtt
tactctcatattggctcagcagaagataaagatggaattgtggcgatttggttgcattca
ttgaacgaaagaaactatccagacctacgtgttgctgaacacaaaccagatgaagtcatt
gtctataagaagattgatgcagcctctgaagaaatgatcaatgaagaggaagctgctgtg
aaagagaacgctaatggcgctggtgagctactcgttggcagtaaggtaaatgatgaaacc
tctgaagaaaagaatatggaagaagggtcaagggtggaagagaaggcgaccgagtga
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