Brassica napus (rape): 106439551
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Entry
106439551 CDS
T04128
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
bna
Brassica napus (rape)
Pathway
bna03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
106439551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bna03400
]
106439551
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
106439551
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
Mating_N
DUF2465
DUF6437
Motif
Other DBs
NCBI-GeneID:
106439551
NCBI-ProteinID:
XP_048632455
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All DBs
Position
A3:complement(18592783..18597017)
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AA seq
937 aa
AA seq
DB search
MEGNFEETNKLPELKLDAKQAQGFLSFFKTLPNDLRAVRFFDRKDYYTAHGENSVFIAQT
YYHTTTALRQIGSGANALSSVSVSKNMFETIVRDLLLERNDHTVELYEGSGSNWRLVKAG
SPGNIGSFEDVLFANNEMQDTPVVVSLFPSFQESRCVVGMAYVDLTRRVLGLAEFLDDSR
FTNLESSLVAIGAKECIFPAESGKTNECKSLYESLERCGVMTTERSRQEFKGRDLESDLK
RLVKGNIEPVRDLISGFELATPALGALLSFSELLSDEGNYGNFTIRRYDIGGFMRLDSAA
MRALNVMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDLNEITMRLDIVQCF
VEEAGLRQDLRQHLKRISDVERLVRSLERRRGGLQHIIKLYQSTIRLPFIKTSLQQYTGE
FSSLISKRYIKRLEALSDADHLGKFIDLVEYSVDLDQLENGEYMISSSYDATLSSLKDQK
ELLEQQIHELHKKTAIELDLPVDKALKLDKAAQYGHVFRITKKEEPKIRKKLTTQFLVLE
TRKDGVKFTNTKLKKLGDQYQSVVDDYKSCQKELVDRVVQTVASFSEVFEELAGMLSEMD
VLLSFADLAASCPTPYCRPEVTSSDVGDIVLEGSRHPCVEAQDWVNFIPNDCRLVRGESW
FQIITGPNMGGKSTFIRQVGVTVLMAQVGSFVPCDKASVSIRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVKKAPTLFATH
FHELTALAQANSEVAGNTVGVANFHVSAHIDTESRKLTMLYKVEPGACDQSFGIHVAEFA
NFPESVVALAREKAAELEDFSPPSIVINNEESGKRKSREDGAEEVSRGAARAHKFLKEFA
EMPLDKMELKDSLKRLHELKEELAKDDVGCHWLKQFL
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtaacttcgaggagacgaacaagcttccggagcttaaattagatgctaagcag
gctcaagggtttctctctttcttcaaaaccctaccaaatgacttgagagctgttaggttc
tttgatcgcaaggattattacacagctcatggggagaactcagttttcattgctcagact
tattaccataccaccactgctctacgccagattgggagtggagcaaacgctctttcaagc
gtcagcgttagtaagaacatgtttgaaaccatcgtcagggatcttctcctggagaggaat
gaccataccgtggagctttacgaaggaagcgggtcgaattggaggcttgtgaaagctggc
tctcctggaaacattggtagctttgaagatgttttgtttgcaaacaacgagatgcaggac
acgccggttgttgtctccttgtttccgagttttcaggagagcagatgcgttgtcgggatg
gcttacgttgatctcacaaggagggttcttggactagctgagtttcttgatgatagccgc
ttcactaacctggagtcttctctcgttgctataggcgcgaaagaatgcattttcccagct
gagtctggcaaaactaatgaatgcaagagtttgtatgagtctcttgagaggtgtggtgtg
atgacaacggagaggagtcgtcaggagtttaaaggaagagatttagagtcagatctaaag
aggttggtgaaggggaacattgagccagttagagatttaatctctgggtttgagcttgcg
actcctgctcttggtgcattactctccttctctgaacttctctcggacgagggtaactat
gggaacttcacaatacgcagatacgacatcggcggattcatgagactcgactctgcagct
atgagggcgttgaatgtgatggagagcaaaactgacgcaaacaagaacttcagtttgttt
ggtctcatgaacagaacgtgcaccgcagggatggggaagagactgcttcatatgtggctc
aagcaacctcttgtggatttgaacgagattacgatgaggttagatatagttcagtgcttc
gttgaagaagctgggttaaggcaagatcttagacagcatctgaagcgcatctcagatgtt
gagaggcttgtgcggagtcttgagagaagaagaggtggtttacagcacattatcaaactc
tatcagtcaactataaggcttcccttcatcaaaacatcactacaacagtacaccggagag
ttctcatcactcatcagcaaaagatacatcaaaaggcttgaggccttatcagacgcagat
cacctcggcaagttcattgatctggtagagtactctgtagatcttgaccagctagagaac
ggagagtacatgatctcctcaagctacgacgccacgttatcatctctcaaagatcagaaa
gagttgctggagcagcagattcacgaactgcacaaaaagacagctatagaactcgatctt
ccggtggacaaggccttgaaactcgacaaagcagcgcagtatgggcatgtgttcaggatc
acgaagaaggaagagcctaagatcaggaagaagctgacaacacagttcttggtgctggag
actcgcaaagacggagtgaagtttacgaacacaaagcttaagaaacttggggaccagtac
caaagtgttgtggacgattataagagctgtcaaaaggagctcgttgatcgtgtagttcag
actgttgccagtttctccgaggtgtttgaggagctagcagggatgctctctgagatggat
gttttgctaagctttgctgatttggctgctagttgccctacaccatactgtagaccagaa
gtcacctcttcggatgttggagacattgtactagaagggagcagacatccatgcgtagaa
gctcaagattgggtgaactttataccaaatgattgtagacttgtgagaggggagagttgg
tttcagataataacgggacctaacatgggagggaagtccactttcattcgccaagttggt
gtgactgttctgatggctcaagttggttcctttgttccttgtgataaagcttcagtttcc
atcagagactgtatctttgcacgtgtaggagcaggcgattgccaactgcgtggagtgtct
actttcatgcaagaaatgcttgaaactgcttcgatattaaaaggagctactgataagtca
ctgataattatcgatgaactgggacgtggaacatcaacttatgatggctttggtttagcg
tgggctatatgtgagcatctggttcaagtgaagaaagctcctactctgtttgctactcac
ttccatgaacttactgccttggctcaagcaaactctgaggttgcaggtaacaccgttggt
gttgcaaacttccatgtcagtgcacacattgatacagaaagccgcaaactcaccatgctt
tacaaggttgaaccaggggcatgtgaccagagctttgggatccatgtggctgagtttgcc
aacttccctgaaagcgtagttgcgctcgcaagggagaaagctgccgaactagaagatttc
tctccaccttccatagttatcaacaatgaggagagtgggaagagaaagagcagggaagat
ggtgcagaggaagtatcaagaggggcagcacgagctcacaagtttctgaaagaatttgca
gagatgccacttgataaaatggagctaaaagattcacttaaacgcctacatgagctgaaa
gaagagctagcgaaagatgatgtgggctgccactggctcaagcagttcctctga
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