Brassica napus (rape): 106439936
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Entry
106439936 CDS
T04128
Name
(RefSeq) nuclear pore complex protein NUP160 isoform X1
KO
K14303
nuclear pore complex protein Nup160
Organism
bna
Brassica napus (rape)
Pathway
bna03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106439936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106439936
03036 Chromosome and associated proteins [BR:
bna03036
]
106439936
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
106439936
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
106439936
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUP160_helical_2
Beta-prop_Nup120_160
TPR_NUP160_120_M
TPR_Nup160_C
HEAT_Nup120
NUP160_helical
INA17_C
Motif
Other DBs
NCBI-GeneID:
106439936
NCBI-ProteinID:
XP_013736946
LinkDB
All DBs
Position
C5:35390550..35398990
Genome browser
AA seq
1493 aa
AA seq
DB search
MERNRLSSSAGMEVPVAGGGNVVKWVDISVSAPPSPENGCVLLPWSEEDYASSCVIGEPP
ISFVWRINKTSSNVLELLQLSSESGFPLTGLRFVFAHTLSPFAFLFADEGNDLVFFLYAL
TPSGVVYLLKLDNTSAYKSGSVFPLDHLTHLDVRPYLNETHVTSVAASPGFLFLGRSDGC
VSCFQPQRPPGGLTFHQELRDDTGLGRLWGFVRGTVVAAVQDLFISEVYGRYLICVLHAD
GALRVWDIFTCSRVLCQSIAAKNVEGVMCLRLWLGKPDYDSGIIPLALLYRNTMDVNVVD
VITVYGLHFSSGEGIALSLDSGLQNISLEGGELCDVRFTSDKIWTLKADELASHMLYHKS
STMEARSYTLQEEYISEQLFLSARSSSHDLLLTSHSLFSSAKDQIMGFISSIFVRRLLCP
GIYHNVSLRLTLRDHNKHWTDSEFQSLSLDELKSEILLLVEQEVTGETSISVFHWWENFC
SCYLDHWCNNNEPCTLLVQSDVIGLVRNNSVSLFSRLENVEHSLGGSSSKHSSLTNLGLG
MSINEHEILSEVLRCTLKINKQWGAAPYAMYYESVTGRPVISSEEIVPRLVNILESGYAM
SIGQRTWSDLGTDRAWEKELEAQKNLRTFSIEMLLSLSALCQRAGSWGKVFTIMEHYLQY
LVPKKVMHNNVGETLSDICCSILVQATSQFAQVMFESAFDIFLLVSYLLNISGQVNMSQQ
DICKLRLELLPMIQDIVSEWLIVLFFVTTPAQLTSMDDFSSKLSSLQIDSSIDKRSWNTM
LGKCGFSLAYILLFSDRSCIVDSRFNLRYLPSSQIITSLVQNFISWIRYSKTGEDASSLL
RRSTELTLRLIRNGQADAVERILLVVEASLRGEKTFGHAQDTNGDWCLLQHLRGCCLLDQ
VQRGACGISRERKISDSIRCFFRASSGEGSWKALHSLAKEAGFSHSTIGASISDGEKSCA
TWKLHYYEWAMQIFERYNISEGACQFAYAALEQVDEAINFMESSENVHPPVTATYCRGRL
WANVFKFTLDLNLLNDAYCAIISNPDEEIKRICLRRFIIVLFECGKTKILSEGHLPFIGL
SDKITQELFWKAGRSEIMIKPNPYKLLYAYEMRRHNWRMAASYMYQFSARLRSEATSTDY
KHKSLVLQERLNGLSAAINALSLVHPGHAWIDPLPEESMHYPAKKAKRVEEQQSVRSSDQ
PKGYQSCIDIEKIQNEYVFTTAEYLLSLKNFEWTYSALEKPPPDLVDLLVQADLYDMAFT
VVLKFWRGSALKRELEKIFENMTIRCCPAKGTLWSSNDLRPNLLLTSTEDEVTHSPERSP
AAQSSNLAGDWEILEVYLKRYKDIHARLPVTVASTLLQADSCIELPLWLVHMFKDGKKEK
ALGMGGQEASPASLFQLYVDYGRLTEATNLLLEYMESFASSKPAEVLKRKKVSGVWFPYT
TVERLWWALEKTMNSGRMLEQCQKLKGQLQQALLNHLKLLKVDSDDAVSSATG
NT seq
4482 nt
NT seq
+upstream
nt +downstream
nt
atggagaggaatcgtctgagttcgtctgccggtatggaggttccagtcgcaggcggcgga
aatgttgtcaaatgggtcgatatatcagtctctgctcctccttctccggagaatggatgt
gttctccttccttggtcggaagaagactacgcttcgagctgtgtaattggcgaacctccg
atctctttcgtttggagaatcaacaaaacgagctcaaacgttctcgagcttcttcagctc
tcttctgaatctgggtttcctttaactgggcttcgcttcgtcttcgctcataccctctcc
cctttcgcttttctattcgccgacgagggtaatgatctcgtcttctttctttacgctctc
acgccctctggtgttgtctacctccttaaactcgataatacttcagcttataagtccggc
tcagtcttcccgcttgaccatctgacccacttggatgttcgaccttacttgaacgaaact
catgttactagtgtggctgcatcgcctgggttccttttccttgggaggtctgatggctgt
gtctcttgcttccagcctcagagaccaccaggtggattaactttccaccaggagctacgt
gatgatacaggacttggtcgtctttggggttttgtaagggggacagttgttgcagctgtg
caagatttgtttatatcagaagtttatggaagatatttgatatgcgtgcttcatgccgat
ggggccttacgtgtctgggacatttttacctgtagcagggttttgtgtcagagtatagct
gctaaaaacgttgagggggttatgtgtctgaggttatggttgggcaaacctgattacgat
tctggcatcattcctttagctctcttgtatagaaatacaatggatgtcaacgtggtggac
gtgatcactgtatatggcctgcactttagttctggggaggggatagccttgtctctggat
tctggactacagaatatttcactggaagggggggaattgtgtgatgtcagatttacatcc
gacaagatctggactctgaaggctgatgaattggcatctcacatgttgtaccacaaatct
agcaccatggaagcacggtcttacactttacaggaggaatacatttctgagcagttattt
ctgagtgctaggagctcttcgcatgaccttcttttgacttcacattcactattttcatcc
gcgaaggatcaaattatgggattcatttcatcaatcttcgtacgtaggcttctttgtcct
ggaatttatcacaatgtttccttgcgtctaactttacgggaccacaacaaacactggact
gattctgaatttcaatccttaagtcttgatgagcttaaaagcgagattcttttactagtt
gagcaagaggttactggtgagacttctatttcagtttttcactggtgggaaaacttttgt
tcgtgctatcttgatcactggtgcaacaataatgaaccttgcacgttgctggttcagtca
gatgttattggtttagttagaaacaattctgtatcactgttctctagattagagaacgtt
gagcacagccttggaggatcttcctccaaacacagcagcctgacgaacttaggcttggga
atgtctatcaatgaacatgagattctgtcggaggtactaagatgtactttgaagatcaat
aagcagtggggtgctgctccttatgccatgtattatgaatcggttactggaaggccagtt
atctcatccgaggaaattgttcctcgcttagttaacatccttgagtcgggatatgcgatg
tccataggtcagcgtacttggtcggatcttggtactgatagagcatgggaaaaagagctg
gaagctcaaaaaaatcttaggacattttccattgaaatgttattgtctctctctgctcta
tgtcaaagggctggatcttggggaaaggtttttactatcatggagcactatttgcagtat
ctggtccctaagaaagttatgcataacaatgttggcgagacattatctgatatctgttgt
tctatcctcgttcaagcgacttctcagtttgcacaggtgatgtttgagtctgcctttgac
atcttcctactcgtcagctatctgcttaacatctctgggcaggtaaatatgtcacagcaa
gacatatgtaagctacggcttgaattgcttccgatgatccaagatattgtctcagagtgg
ctcatcgttcttttctttgttaccacgccggctcaattgacttcaatggatgatttcagc
tctaagctctcatctctacagattgatagcagcattgacaaaagatcatggaacacaatg
cttgggaaatgcggtttctcattggcgtatattcttcttttcagtgaccgaagttgcatt
gtggatagccgatttaacttaagatatcttccaagttcacaaatcattacaagcttggtt
caaaactttatcagctggattcgttatagtaaaacaggagaagacgcttcttctttgcta
agacgctcaactgagcttactcttaggttgatcaggaatggacaggctgatgcggttgag
cgaatcctcttggttgtggaggcaagtttacgtggggagaaaacatttggacatgcccaa
gataccaacggagattggtgtcttcttcaacatctccgtggttgttgcctccttgatcaa
gtacaacgtggagcatgcgggatatcaagagagaggaagattagtgattccatccgctgc
ttcttcagagcttcatcaggtgaaggatcttggaaggctttgcacagtttggctaaagaa
gcaggattttcacattccacaattggtgccagtatttcagatggtgaaaagtcttgtgca
acatggaaacttcattactatgaatgggctatgcaaatttttgaacggtataatataagt
gaaggagcttgtcagtttgcgtatgcagcccttgagcaagtagacgaggccattaatttc
atggagagtagcgagaacgtccatccacctgtaacagccacttactgtagaggacgactg
tgggcaaatgttttcaagttcacgttagatctgaatctcttgaatgatgcttactgcgct
attatttcaaaccctgatgaggaaattaagcgcatctgtttgaggcgcttcatcatagtt
ctatttgaatgtggcaaaaccaagatcctcagtgagggacatttgcctttcatcggctta
tcggataagatcacccaagagctcttttggaaggctgggcggtctgagataatgataaag
ccaaatccatacaagctgctttatgcttacgagatgagacgacacaattggcgaatggcg
gcaagttacatgtatcagttttctgctcgtctgagaagtgaggcaacatccacggattat
aaacacaagtccctagttttgcaagagaggctaaatggactttctgctgctataaatgca
ttaagtcttgtgcatcctgggcatgcttggattgatccactaccagaagaatccatgcat
tatccagcaaaaaaggctaaaagagtagaagaacaacaatcagtaaggagtagtgaccag
ccaaaagggtatcagagttgcattgatatcgaaaaaatccaaaacgagtatgttttcacc
acagcagaatatttgctttctctgaaaaactttgagtggacatattcagcgctcgaaaag
ccaccaccggacttggttgaccttcttgttcaggcagacttgtatgacatggcattcact
gttgttttaaaattttggagaggctcagctttgaaaagggagctggaaaagatatttgag
aatatgacaattagatgttgccctgctaaaggaacgttgtggtcatcaaatgatctcagg
cctaatcttttgctaacatctacggaagacgaagtcactcattcgcctgagagaagccct
gctgctcaaagctccaacttggctggtgactgggaaattcttgaggtttatcttaagagg
tacaaagatatacacgctagattgccagttactgttgcttcaacccttcttcaggcagat
tcttgtatcgaattgcctctttggctggttcacatgttcaaggacggcaagaaggagaaa
gctttgggaatgggtgggcaagaagcaagtcctgcttccttgtttcagttatatgttgac
tatgggcgtcttacagaggccactaatttgctattggagtacatggaatcatttgcatca
tcaaaaccagcagaggtattgaaaaggaaaaaggtatcaggggtttggttcccttacaca
acagtggaaagactatggtgggcgctagagaaaacgatgaactcaggacggatgttggag
cagtgccagaagcttaagggacaactccaacaagcgttactcaatcacttaaagctgctg
aaggtggactcggatgatgctgtgtcgtctgcaacaggctga
DBGET
integrated database retrieval system
