Brassica napus (rape): 106440361
Help
Entry
106440361 CDS
T04128
Name
(RefSeq) 25S rRNA (cytosine-C(5))-methyltransferase NSUN5-like
KO
K15264
25S rRNA (cytosine2278-C5)-methyltransferase [EC:
2.1.1.311
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bna03009
]
106440361
Enzymes [BR:
bna01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.311 25S rRNA (cytosine2278-C5)-methyltransferase
106440361
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
Other ribosome biogenesis factors
106440361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Methyltr_RsmB-F
NSUN5_N
NSUN5_fdxn-like
Methyltransf_31
Ubie_methyltran
FtsJ
PCMT
Methyltransf_4
ASPP2-like_RA
Motif
Other DBs
NCBI-GeneID:
106440361
NCBI-ProteinID:
XP_013737460
LinkDB
All DBs
Position
C9:complement(3616906..3619850)
Genome browser
AA seq
497 aa
AA seq
DB search
MARRKSNAPPKATRQPAKQKFSSAERSSLYASREAAKVLGTALRGDAERRAVASIKSLVF
SPSVRNKRGTFALVCETLKHLTVIKEVLEIANALNSKWKRQEPLVYIICYDILFGKEPPL
IGDAEKFLMKRKDALVSSLATLLVRKKAETVDKLLGVSQLNGPLKPRYVHVNTLKMDVDS
AVQELGKLYKVQKDETVPDLLVMPPGSDLHAHHLVKNGRTFLQGKGSAMVAVALQPEADW
EVIDACAAPGNKTINLAALMKGQGKIIACELNEERVKRLEQTIKLSGATNIEVSHGDFLG
LNPEDPSFAKVRAILLDPSCSGSGTITDRLDHLLPSHSADNKNYDSIRLHKLAVFQKKAL
AHALSFPQVERVVYSTCSIHQIENEDVVSSVLPLASSLGFELATPFPQWQRRGLPVLAGS
EHLLRMDPEEDKEGFFIALFTKTSKLENSNSSEIPERECRRRRKQGHPFLWPKVFFRAWN
GRMSSFISSSNSEDYVS
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgtcgcaaatccaacgcgccgccgaaagccacgcgccagcctgccaagcaaaag
ttctccagcgccgagagatcatctctgtacgcatcaagggaagcagctaaggtcctcggc
acagctctccgaggagacgccgagcgtcgagccgtcgcttcgataaagtcactcgtcttc
agcccttccgtccgcaacaaacgcggcaccttcgctctcgtctgcgagaccctcaaacat
cttactgtaataaaagaagttcttgaaatcgctaacgcgttgaatagcaaatggaagaga
caagaaccattggtttacattatttgctatgatatccttttcggaaaggagcctccatta
attggtgatgctgagaagtttctaatgaaacgtaaagatgctctagtgtcaagtctagcc
acgcttctagtgaggaagaaagctgaaactgttgataagttgttgggtgtttctcagctc
aatggtcctttgaaaccacgttatgttcacgtaaatacactcaagatggatgttgattcg
gcagtgcaggagctggggaagctatataaggtgcagaaggatgagacagttcctgacctg
ttggtgatgccacctggcagcgatttgcatgctcatcatttggttaagaatgggcgtaca
tttttgcagggaaagggaagtgcaatggtagcagtagcactacagccagaagcagattgg
gaggttattgatgcatgtgcagctccaggaaacaaaactattaatcttgctgctcttatg
aaaggacaagggaaaatcatagcgtgtgagctaaatgaagaacgtgtaaagcgtttggaa
cagactattaagctctctggtgctaccaatattgaagtctctcatggtgattttttggga
ctaaatccggaagatccttcttttgcaaaggttcgggctatattgttggatccttcttgc
tctggctcaggaaccattacagatcgtttggaccaccttcttccttctcattcagcagat
aacaagaactatgactccataagactccacaaactcgctgttttccagaagaaggctctt
gctcatgcactctcctttccacaggttgagagagtcgtatacagcacatgctccatccac
cagatagaaaacgaagatgtggtctcatctgttttgccattggcttcatccttgggcttc
gaactcgctacccctttccctcagtggcagcgtcgtggtctccctgtattagcaggatct
gagcatttactcaggatggatccagaggaggacaaagaagggttcttcatcgctttgttc
accaagacaagcaaactcgagaactcgaactcgtctgagattcctgaaagagagtgtaga
agaagacgcaaacagggtcatccgtttctttggcctaaagtgttcttcagagcttggaat
gggcggatgagtagcttcatatcaagtagcaactcagaagactacgtttcttaa
DBGET
integrated database retrieval system
