Brassica napus (rape): 106440643
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Entry
106440643 CDS
T04128
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106440643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106440643
03012 Translation factors [BR:
bna03012
]
106440643
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106440643
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106440643
Translation factors [BR:
bna03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
106440643
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
T2SSE
ATPase
nSTAND3
AAA_19
AAA_16
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
106440643
NCBI-ProteinID:
XP_048623237
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All DBs
Position
C9:complement(63169925..63175451)
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AA seq
1155 aa
AA seq
DB search
MRFTKRISFFLWQATKLPTRSLPRNPSLCRSYIVGAPISSGDVVTGLSYGQIRRRFIGYT
AEQFSDDEYECEFEEHKASSSVANVDEWKWKLGILLANDSEREIVSRDKRDRRDYEQISN
LAKRMGLYSEIYGKVVVASKVPLPNYRPDLDDKRPQREVVLPLSLQRRVEGLLQEHLDRQ
QLNSGKANESEADSHPPKQTEELPDESSDAFLDGSVMEKVLQRRSMRMRNMQRAWQESPE
GRTMLGFRKSLPSFKDKERLLQAIARNQVIVVSGETGCGKTTQLPQYILESEIESGRGAF
CNIICTQPRRISAMAVAERVSAERGEPLGETVGFKVRLEGMRGKNTQLLFCTSGILLRRL
LSDRNLNGITHVFVDEIHERGMNEDFLIIVLKELLPRRPDLRLVLMSATLNAELFSNYFG
GAPTIHIPGFTHPVKAHFLEDVLEMTGYKLTSFNQVDDYGQEKTWKTQKQLMPRKRKNQI
TSLVEEALSKSTFESYSSRTRDSLSSWMPDCVGFNLIEAVLCHICRKERPGAVLVFLTGW
DDISSLRDQIKAHPLLGDPNRVLLLMCHGSMATAEQRLIFERAPPNIRKIVLATNMAEAS
ITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRLLPGECYHLYPK
CVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIAGFLSAALQAPEPLTVQNAIGFLKMI
GALDEKENLTDLGKLLSILPVDPKLGKMLIMGAIFHCFDPILTIVSGLSVRDPFLLPQEK
KDLALSAKLRFSAKDYSDHMALVRAFEGWKNAEREGSAYEYCWRNFLSAQTLQAIHSLRK
QFNYILKEAGLVHDDSALNNKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQ
VSLYANSVNSRFPTIPYPWLVFGEKVKVNAVLIRDSTGVPDSSLILFGGSLSTGVQVGHL
KMLDGYIDFFMDPNLADSYVKLKEELNKLLQKKLEDPSVDIHKEGKYLMLAVQELVAGDQ
CEGRFVFGRDTKRASQPQLAGENNKLSKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNE
FRALVEFKGMQFVGKPQRNKTLAEKDAAVEALAWLTHTSDNSTDQYSGDADSPPDVTDNM
LKLLGGKRRRRSKGK
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttcaccaaacgaataagcttcttcctgtggcaggccaccaagctccccactcgc
tctctaccgagaaacccatctttatgcaggtcttatatcgttggtgctccgatctctagt
ggcgatgttgtcacgggtttgtcctacggccagatacgtcgtcgtttcatcgggtacact
gcggaacagttctctgatgatgagtacgagtgtgaattcgaggaacataaggcttcatct
tctgtggccaatgttgatgagtggaaatggaagttagggattctgctggctaatgatagc
gaacgagagattgtttctagagacaaaagagaccgaagggattatgagcagatctcaaat
cttgccaagagaatgggactctacagtgagatctatggaaaagtggttgttgcaagcaag
gttcctcttcccaactacaggccagatttggatgataagcgtccacaacgggaggtggta
cttcctttgagtttgcagagaagggtagaggggctactccaggaacaccttgatagacag
cagctgaactcaggaaaggctaatgaaagtgaagctgattctcatcctcctaagcagact
gaagagcttcctgatgaaagttctgatgcgtttctagatggttctgtaatggagaaggtg
cttcagaggaggagtatgcggatgcgcaatatgcagagagcctggcaggaatcacctgag
gggcgtacaatgctgggattccgaaaatctttgccttcattcaaggacaaggaaagactt
cttcaagctattgctcggaaccaggtaatagtggtatctggggagactgggtgtggtaag
acaactcaactgccacagtacattttggaatcggagatagagtctggtcgaggagcgttc
tgcaacatcatttgcacacaacctcggaggatatctgccatggcagttgcagaaagagtg
tcagctgagagaggagaacctcttggtgaaacggttgggtttaaagttcgtctagaagga
atgagagggaagaatactcaacttctgttttgtacaagtggtattctactcagacgactg
cttagtgatcgcaatttgaatggcataacacatgttttcgttgatgagattcacgaaagg
ggaatgaacgaagatttcttgataatagtgttgaaggagcttcttccacggcgtccggat
ctgagattggttctcatgagtgccactttgaatgctgaactcttctctaactattttgga
ggagcacctacaattcacattccaggcttcacacatccagtgaaggcacattttctggag
gatgtactcgaaatgacgggatataagttgacctctttcaaccaagtagatgattatggc
caagaaaagacttggaaaacgcagaagcagttgatgccacgcaaaaggaaaaaccagatc
acttctcttgttgaggaagctcttagcaagtcaacttttgaaagctatagctctaggact
cgtgattcgctctcgtcttggatgcctgattgcgtaggatttaatcttattgaggccgtt
ctctgtcacatatgccgcaaagaacgtccaggagctgtactagtgtttttgacaggatgg
gatgatattagctccctgagggaccaaatcaaagcacatcctctcctcggtgatcccaat
agggtcttgctgttgatgtgccacggttcaatggcaactgctgaacagagactcattttc
gagagagcacctcctaatattcgcaaaattgtacttgctacaaacatggcagaagctagt
attacaataaacgatgtagtttttgtggttgactgcggaaaggcaaaagagaccacctat
gatgctttgaacaatacaccttgtttgctaccctcatggatatctcaagcttctgctcga
cagcgaaggggtagagctggtcgtctgcttccgggagaatgctatcacctgtaccccaaa
tgcgtgtatgaagctttttcggagtatcaacttcctgaacttctgaggactcctttaaat
tctctctgcctgcaaattaaaagtcttcaggttgaaagcattgcagggttcttgtcagct
gcacttcaggctccagaacctttgaccgttcaaaatgctattggattcctgaaaatgatc
ggagcactggatgagaaggaaaatctgacggatcttgggaaactcttgtcgattctccca
gttgatcccaagctggggaaaatgctcataatgggtgccatcttccactgctttgatcct
atcctgacaattgtatcagggctcagtgtcagagatcctttccttctacctcaagaaaaa
aaggacttagctttatcagccaagttgagattctcagcgaaagactacagtgaccatatg
gcactcgttcgcgccttcgaagggtggaaaaacgctgaaagagaaggatcggcttacgag
tactgttggaggaactttctatcagctcagacgcttcaggcgatacattctctgaggaag
cagttcaactatatcctgaaagaagctggcttagtacacgatgactcagctctcaacaac
aagctaagtcacaatcagtctcttgttcgcgctgtcatttgctctggcttattccccggg
atagcatctgttgtgcacagagagacttccatgtcgttcaagacgatggatgatggccaa
gtatcactatacgcgaactctgttaattcgaggttcccgacgattccatacccttggcta
gtctttggagagaaagtaaaagtcaatgcagtgctcataagagactccacaggtgtccct
gattccagtttgatcctttttggtggttcactgagcaccggagtacaggtgggacatcta
aaaatgcttgacgggtacattgacttcttcatggatccaaatttggcagactcctacgtg
aagctgaaggaagaactcaacaagcttcttcagaagaagcttgaagatccaagcgtggac
atccacaaagaaggcaagtacctgatgcttgcagtccaagagctcgtagctggagaccaa
tgcgaagggagattcgtattcggccgtgacacaaagagggcaagccaaccgcaattagca
ggagagaacaacaaactctccaaagacgggacaaacccgaagagtctccttcagacgctt
ttaatgagagctggacactcgcctccaaagtacaagaccaaacatctgaagacaaacgag
tttagagcgcttgtggagtttaaagggatgcagttcgttgggaagcctcagaggaacaaa
acgctcgctgagaaagatgcagctgttgaggccttggcttggttgactcatacctctgat
aatagtactgaccagtacagtggagacgcggattctccacctgatgttactgataacatg
cttaaactccttggtggaaaacggcgcaggcggtccaaaggcaagtag
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