Brassica napus (rape): 106441020
Help
Entry
106441020 CDS
T04128
Name
(RefSeq) probable helicase MAGATAMA 3 isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106441020
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106441020
5.6.2.5 RNA 5'-3' helicase
106441020
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106441020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_30
AAA_19
UvrD_C_2
AAA_16
Motif
Other DBs
NCBI-GeneID:
106441020
NCBI-ProteinID:
XP_013738259
UniProt:
A0A816W9I2
LinkDB
All DBs
Position
A3:28608939..28614530
Genome browser
AA seq
1282 aa
AA seq
DB search
MASEGKMLFDLNELPTEDDDGSGVNQPQKAIPSASPNTSTGLLATPQDKANSRVFLHAST
ASGFQPFVRPLASQHTDVVVERKTDEFAYKEASSSVVPDDAGAPEREEGELMESEAPASD
SIDCKGMAMPETGVSSDDSKVTEKGCSTVGLDVASDSGLQKRNVNLSSECSGKDSASIDG
GPQEQGLTVKQRETKGVEASHAIKCANTTVKRKWDQQKETMLGKKRNRQTMFLNLEDVKQ
AGPIKTTTPRRQNFPQPVVTRTVRESRAGAEQGTSEQKSESNGESQPGLVAKTRRINGDA
GPSSEGTTTSVSRQGSWKQPAYSQSKPGQSSSRQVSLRSQSSADSKFGNKKLTSFKKPVT
NSTQYQDTSVERLIREVTNEKFWHHPEDTELQCVPERFESMDEYVRVFEPLLFEECRAQL
YSSWEESCEANSYMKVRIKFVERRERGWYDVILNSLNECKWPFKEGDVAVLSTPVPESEG
EHEDGGRVAGTVRRYIPVDTRDPHGAILHFYVGDSYDSGSNVDDNHILRKLKPKEIWHLT
VLGSLATTQREYVALHAFGQLNPQMQNAILRPSPEQFPNYGEQTPTVPDCFTPSFAGHLH
RSFNAPQLAAIHWAAMHTAAGTSSGAKRQDPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQ
YQQYYTSLLKKLAPESYKQVNEGSSDNIVSGSIDEVLQNMDQNLFRTLPKLCAKPRMLVC
APSNAATDELLSRVLDRGFIDGEMRVYRPDVARVGVDTQTRAAQAVSVERRSDQLLAKSR
DEILGHMHNLRLREAQLSQEIAGLKRELTAAAFTNRSQGSVGVDPDVLMVRDQTRDALLQ
RLSAVVEARDKDLVEMSRLLIVEGKFRAGNSFNLEEARASLEASFANEAEIVFTTVSSSG
RKLFSRLTHGFDMVVIDEAAQASEVGVLPPLALGAARCVLVGDPQQLPATVISKAAGTLL
YSRSLFERFQLAGCPTLLLTLQYRMHPQIRDFPSRYFYQGRLTDSESVTTAPDEIYYKDS
VLKPYLFFNISHGRESHRGGSVSYENIDEARFCVGLYMHLQRTLKSLGGGKVSVGVITPY
KLQLKCLKMEFGNALGPDEVKEIYINTVDAFQGQERDVIIMSCVRASGHGVGFVADIRRM
NVALTRAKRALWVMGNASALMKCEDWAALITDARERNCFMEMESLPKDFPVPSFIPKAPN
ARGFRPGGSRTRSIDMLHNETRSGTPSEDDERQQQLSARMTTFPRNGNFRRENSVVDDSD
QSWQHGTIQRRQNFGRPFGRRD
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
atggcttcagaaggaaaaatgttatttgatcttaatgaacttcctacggaagatgatgat
ggtagtggtgtgaatcagcctcagaaggctatcccatctgcaagccccaatacttctact
ggcttgctggcaacacctcaagataaagcaaacagccgagtgttcttgcatgcgtctacg
gcgtctggctttcagccttttgtccgccccttggcttctcaacatacagatgtagtggtt
gaacggaagacagacgagtttgcttacaaggaagcatcatcatcagtagttccggatgac
gctggagcacctgagagagaagaaggggaattgatggagtctgaggctcctgctagtgat
agtatcgattgtaaaggtatggcgatgccagaaactggcgtctcttctgatgattctaaa
gttacagagaaaggttgtagcacagtaggattagatgttgcctcagactctggtcttcaa
aagaggaacgtcaacctgagttcagaatgcagtggtaaagatagtgcatctatagatggt
ggtccgcaagagcagggtttaactgtgaagcagagagaaacgaaaggagttgaagcaagt
catgcaatcaagtgcgcaaataccactgtcaaaagaaagtgggatcaacagaaagagacc
atgttgggaaagaaacgaaacaggcagactatgtttctcaacctggaagatgtcaagcaa
gctggccctattaagaccacaacacctagaagacagaatttcccgcaacctgttgtcaca
cgcacagttagagaatctcgcgcaggggctgagcaaggaacgtctgaacagaagtcagaa
tctaatggggaatcacaacccggattggttgctaaaactaggcggataaacggggatgca
ggaccttcttcagaggggacaacgacatccgtgtcaaggcagggttcatggaagcaaccg
gcatattcacagtcgaagcctggtcagtcgtcaagtagacaagtctccttgcgcagtcaa
agttctgcagactcaaagttcggaaacaagaagcttacgtcgttcaagaagccagtcaca
aatagtactcaataccaagatacatctgtggagcgtcttatacgagaggtgaccaacgaa
aagttctggcatcatccagaggatactgagctccagtgtgttcctgagcggtttgaatcc
atggatgagtatgttagagtgtttgaacctttactttttgaggagtgccgggcacagctt
tacagttcatgggaagaatcatgcgaggcaaattcatacatgaaggtcagaataaagttt
gtggaacgaagagagcgaggttggtatgatgtgatacttaattcactaaatgaatgtaaa
tggccattcaaggagggtgatgttgcagttctgtcaacacctgttcctgaatcagaagga
gagcatgaggatggtggacgtgtagctggtacagttaggagatatatacctgttgacact
cgagatccccatggagcgattctccatttctatgttggagactcttatgactccggcagc
aatgttgatgataatcatatattacggaagcttaaaccgaaggagatctggcatctgaca
gtgcttggttcgcttgcaaccacacagagggaatatgttgctttgcatgcatttggtcag
cttaacccacagatgcaaaatgcaattctcagacccagcccggagcagtttcctaattac
ggtgagcaaactcctacagtacccgattgttttactccgagctttgctggccatttgcat
agaagctttaatgctccacagttggctgcaatccattgggctgcaatgcacactgcagct
ggtaccagcagtggggctaagaggcaagatccatggccatttactcttgtccaaggccct
cctggaacaggcaagacacacacagtgtggggaatgttgaatgtcatccatttggttcag
tatcagcagtattacacttccttgctgaagaaattagctcctgaaagttataaacaagtt
aatgagggcagttcagataatattgtgtctgggtctattgacgaagtcctacaaaatatg
gatcagaacctattccgtactctaccaaaactgtgtgcgaaaccaaggatgctcgtttgt
gctccttcaaatgctgcgaccgatgaacttctctcacgtgtccttgatcgtggttttatt
gatggggaaatgagggtttatcgacctgatgttgctcgagtaggtgttgatactcaaact
agagctgctcaagcagtctctgtggagcggagaagtgatcagctattagccaagtcccgt
gatgaaattctaggacacatgcacaacctcaggttacgagaagctcagctctctcaagaa
attgctggacttaaaagggaacttactgctgcagccttcactaatcgttcgcagggatcc
gttggtgttgaccctgatgttcttatggttagagaccagaccagagatgcattgttacag
cgcctttctgctgtggtggaagccagagataaagatcttgttgaaatgtctcgccttcta
attgttgaggggaagtttcgcgcaggtaacagttttaaccttgaagaagctcgcgcaagt
cttgaggcgagtttcgcgaacgaggctgaaattgtttttacaaccgtatcaagcagtggt
cgtaaactgttttctcgtcttacacatggcttcgatatggtggtcatcgacgaggctgcc
caagctagtgaagttggagttcttcctccacttgctcttggtgctgcaagatgtgtactc
gtcggtgatcctcagcagcttcctgctacagttatcagcaaagctgctggaaccctgtta
tacagcagaagtctctttgaaaggtttcagttagcaggctgtccaacattgttgttaact
cttcagtataggatgcatcctcaaattcgtgatttcccttcacgatatttctaccaagga
cgcctcactgacagcgaaagtgttaccactgctcctgatgagatttactacaaagattct
gtactcaagccttaccttttctttaacatcagtcatggacgagaatcccatagaggtgga
tcagtttcttacgagaacattgatgaagctcgcttctgtgttggactttacatgcatctt
cagagaactcttaagtcattgggtgggggtaaagtctctgttggggtgataactccatat
aaactgcagctaaaatgcctgaaaatggagtttggaaacgctttgggaccagatgaagtg
aaagagatttatattaataccgtagacgcgtttcagggtcaagaacgtgatgtcataatc
atgtcatgtgtgcgtgcttccggtcacggggttgggtttgtcgcggatatacgacggatg
aatgttgctctcacacgtgccaaaagagctctatgggtgatgggaaacgcatctgctctg
atgaagtgtgaggattgggctgcactgatcacggacgcccgagaaaggaactgttttatg
gagatggagtctcttcccaaggatttcccggtacctagctttatccctaaagcgcctaat
gctagaggttttaggccaggtgggtcaaggaccagatcaatcgacatgctgcataatgag
acaaggtcagggacaccatcagaagacgacgagaggcagcagcagcttagcgcaaggatg
acgacgtttccaagaaatggtaattttcgaagggagaattcagtagttgatgattctgat
cagtcttggcaacatgggacgatccagaggaggcaaaattttggacggccttttgggaga
agagactaa
DBGET
integrated database retrieval system
