Brassica napus (rape): 106441989
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Entry
106441989 CDS
T04128
Name
(RefSeq) rhamnogalacturonate lyase
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
106441989
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
106441989
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarbopepD_reg_2
EMC7_beta-sandw
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
106441989
NCBI-ProteinID:
XP_013739188
UniProt:
A0ABQ8EJI6
A0A078J7G9
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Position
A1:8072270..8075806
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AA seq
645 aa
AA seq
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MSDQSSVHLDVKDNHVVMKNGIVEVTISKPDGFVTGISYHGVNNLLESHNEDYDRGYWDL
VWSEYGTPGTTGNSERIKGTSFEVVVENEELVEISFTRKWDSSLQDHIAPINVDKRFIMR
KDVTGFYSYGIFEHLAEWPAFNLPQTRIVYKLRKDKFRYMAVADNRQRKMPLPEDRLGKR
GRPLAYPEAVLLVHPVEEEFKGEVDDKYEYSCENKDLKVHGWISHNLDLGCWQIIPSNEF
RSGGLVKQNLTSHVGPISLAMFISAHYAGEDMVMKVKAGESWKKVFGPVFTYLNCLPDQT
SDPLSLWQDAKSQMLIEVQSWPYGFPASEDYALSDKRGCINGRLLVRDKSLSDELLPANG
AFIGLAPPGEVGSWQTESKGYQFWTEADADGYFTINNIREGEYNLNAYVTGWIGDYQYEE
LITITAGCDIDISSIVYEPPRDGPTVWEIGIPDRSAAEFFVPDPNPKYINKLYIGHPDRF
RQYGLWERYTELYPKEDLVFTIGVSDYKKDWFFAHVTRKTGDDTYEKTTWQIKFKLEKVQ
ENSTYKLRIALATANVAELQVRMNEDESEKSLIFTTGVIGHDNTIARHGIHGLYRLYNVD
VPSEKFVEGDNTLFLTQAMTTVGAFNGLMYDYIRLEEPCLDSNIR
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaccaaagttctgttcacttggatgtcaaagacaaccatgtggttatgaaaaat
ggtatagtcgaagtgaccatatcaaaaccagatggttttgtcactggaatctcttaccat
ggtgtcaacaatctactagaaagtcataatgaagactatgatcgaggttactgggacctt
gtttggagcgagtatggaacgcctggaaccacaggaaactccgagcggatcaaaggcaca
agttttgaagtagtagtggaaaatgaggaactggtagagatatccttcacaagaaaatgg
gattcttctctccaagatcatattgctcccattaatgtcgacaagaggttcataatgcgt
aaagatgttactggattctactcatacggaatattcgagcatctagctgaatggccagct
tttaacttgcctcagacaaggattgtttacaagcttcgtaaagacaagtttcgatacatg
gcagttgctgataacaggcagagaaaaatgccgcttccagaagatagattgggtaaaaga
ggaagaccattggcttatcctgaagctgttcttcttgttcatcctgttgaagaagagttc
aaaggagaggttgatgacaagtatgagtattcatgtgagaacaaagatcttaaagtgcat
gggtggatctcgcataaccttgatttgggttgctggcaaatcattcctagcaatgagttt
agatcaggtggcttggtgaaacagaaccttacttctcatgttggtccaatcagtctcgct
atgtttataagtgctcattatgcgggtgaggacatggtgatgaaggtaaaagcaggggag
tcatggaagaaagtgtttggtcctgtttttacttaccttaattgtttgcctgaccaaacc
tctgatcctctttcactatggcaagacgctaaaagccagatgttaattgaagtccaaagc
tggccttacggtttccccgcttcagaagactatgcattgtctgataagcgtggttgcatc
aatggtagattactagtacgagacaagtcccttagtgatgaacttttaccagcgaatggt
gctttcataggtttggctccaccaggagaggttggatcttggcaaacagaatctaaagga
tatcagttctggacagaagcagatgcagatggttatttcaccataaataatatccgagaa
ggtgaatataatctcaatgcttatgtgacaggatggattggagactatcaatacgaagaa
ctgattaccatcactgcaggctgcgacattgacattagcagtatcgtgtatgaaccgcca
cgagatgggccaacggtgtgggaaataggaatccctgaccggtcggcagctgagttcttt
gttccagacccaaatcccaaatacatcaataagctatatattggtcatcctgacaggttt
aggcaatatgggctatgggaaagatacacagaactatatcctaaggaagatttggtgttc
accattggcgttagtgattacaaaaaagattggttctttgcacacgttaccaggaaaaca
ggtgatgatacttatgaaaagacgacgtggcaaataaaattcaagctcgagaaggtgcag
gaaaacagcacatacaaacttaggatcgcactagcaaccgcaaatgtagcggaattacag
gtgaggatgaacgaggatgagagtgaaaagagtttgattttcacaactggtgtaatagga
cacgacaacacgatcgcaagacatgggatacatggactctatagactttataatgtggat
gtaccgagtgagaagtttgtcgaaggagacaacactttgttcttgacacaagcgatgact
accgttggagcttttaatggtcttatgtatgactatatccgccttgaagagccttgttta
gattcgaacattcgctaa
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