Brassica napus (rape): 106444037
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Entry
106444037 CDS
T04128
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106444037
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
106444037
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
106444037
NCBI-ProteinID:
XP_013741025
UniProt:
A0A078J3N0
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Position
A3:complement(17973038..17975304)
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AA seq
453 aa
AA seq
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MQKKTWILNFSVFFLHIFTSSKALDVTQYGAIGDGVTEDSQAFLKAWEAVCSGTGDGQLI
VPAGMTFVLQPLKFQGSCKSNPIVVQILGNMVASSRGNWEGDKDQWILFSDIEGLVVEGN
GVINGQGSSWWEHKGSSRPTALKFKSCNNLRLSGLTHVDSAKAHIHINNCNGVSISNLRI
NAPESSPNTDGIDVAASSNVIIQDCVIATGDDCIAINSGTSNIRVCGIDCGPGHGISIGS
LGKDGETASVEDICVQNCNFRGTTNGARIKTWPGGSGYARRITFSGITLDNVENPIIIDQ
HYNNGGSEKNTDDKSSAVEISKVVYSNFVGTSKSEYGVDFRCSAAVPCTEIFMKDVRIET
PSSGSGQVAQGQCLNVRGVSTLAVPGLECLALSTDMLSSAELPEQTCMLPQPSVQPSTRP
MQDPFWVYGSGGKRHRVFDVVLTSFIFVVLYMY
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagaagacttggatcttaaatttctcagtgttctttctccatatctttacatct
tcgaaagcattggatgttactcaatacggagcgattggagatggagttacagaagattct
caggcgttcttgaaagcctgggaagctgtctgtagcgggacaggggatgggcagcttatc
gttccggcagggatgacatttgtgttacagcccttgaagtttcaaggttcttgcaaatca
aaccctattgttgttcagattttgggcaatatggttgcatcaagtagagggaattgggaa
ggagacaaagaccagtggattctcttctcagacatagaagggcttgtggttgaaggcaac
ggcgtaattaacggccagggttcgagctggtgggaacacaaaggcagttctagaccaacc
gcattgaagttcaagagctgcaacaaccttagactaagtggactaacgcacgtagatagt
gcaaaggctcacattcacataaacaattgcaacggtgtgagcatctcaaatctccggata
aatgcaccggaatcaagtcctaacactgatggaatcgatgtcgctgcttcatccaatgtt
atcatccaggattgcgtaatcgccaccggtgacgattgcattgcgataaattcggggacg
tctaacatcagagtttgcggtatagattgcggaccaggccatggaataagcataggaagc
ttgggaaaagatggagagacagcttcagtggaggatatatgtgtccaaaactgtaacttt
agaggaactacgaatggggctcggatcaaaacctggccgggaggatcaggttacgcaaga
aggattactttcagtggaattactctagataacgtggaaaacccgatcataatcgatcag
cattacaacaatggaggttctgagaaaaatacagatgataagtcatcggcggttgaaata
agcaaagtcgtgtatagtaatttcgtggggacgtccaagtcagagtacggagttgacttt
aggtgtagcgcggctgtaccatgcacagagatttttatgaaagatgtgagaatagaaaca
ccatcatcaggatcaggacaagtcgcgcaaggacagtgcttaaacgtgagaggtgtgtcc
acacttgccgtaccaggtttagaatgtttagcactttccacagatatgttatcatcggcg
gagttgccggaacaaacttgtatgttgccgcaaccatcagtgcaaccaagtacacgaccg
atgcaagatccattttgggtttatggaagcggagggaaacgacacagagtttttgatgta
gtattaacttcatttatatttgtcgttttatatatgtattag
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