Brassica napus (rape): 106444880
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Entry
106444880 CDS
T04128
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
bna
Brassica napus (rape)
Pathway
bna04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
106444880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bna04121
]
106444880
Ubiquitin system [BR:
bna04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
106444880
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
F-box-like
F-box
Motif
Other DBs
NCBI-GeneID:
106444880
NCBI-ProteinID:
XP_048634218
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Position
A4:264542..267496
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AA seq
592 aa
AA seq
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MYKRVSLSFPEEVLEHVFSFIHVDKDRNSVSLVCKSWYEIERWCRRKVFVGNCYAVSPGR
VIRRFPKLRSVELKGKPHFADFNLVPEGWGGYVYPWIEAMSTSYTWLEEIRLKRMVVSDE
CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAASCRNLRELDLRESDVDDVSGHWLSHFP
DTYTSLVSLNISCLSSELSFSALERLVTRCPSLKSLKLNRAVPLEKLAILLQRAPQLEEF
GTGGYTADVRPDVFSDLSVALSGCKKLKCLSGFWDAAPAYLPAVYSVCCRVTTLNLSYAT
VQSYDLVKLLSQCPKLQRLWVLDYIEDTGLEVLASTCKDLRELRVFPSDPFVMEANVALT
EQGLVSVSMGCPKLESVLYFCRQMTNDALVTIARNRPNMTRFRLCIIEPKAPDHMTLEPL
DVGFGAIVEHCKNLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGESDLGMHHVLSGC
DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE
RGPPDSRPESCPVERVFIYRTVAGPRFDMPGFVWNMDQQHSTMRVCQGNGHY
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgtataagcgagtgtcgttatcgtttccagaagaagtcctcgagcacgtattctcgttt
atacacgtggacaaggacaggaactcggtgtccctggtgtgcaagtcgtggtacgagatc
gagcggtggtgcaggaggaaagtcttcgtcgggaactgctacgcggtgagccccgggagg
gtgataaggaggttcccgaagctgagatccgtggagctgaaggggaagccgcacttcgcg
gacttcaatttggtgccggaggggtggggagggtacgtgtacccgtggatagaggcgatg
tcgacgtcgtacacgtggctggaggagataaggctgaagaggatggtggtgagcgacgag
tgcttggagctcatcgctaagtcctttaagaattttaaggttctcgtgctttcttcctgc
gaaggcttctccaccgatggcctcgctgctatcgccgcctcttgcaggaatctgagagag
cttgatttgcgtgagagtgatgttgacgatgttagcggccactggcttagccatttccca
gacacatacacttctttggtatctctcaatatctcttgcttatcctctgagctcagtttc
tctgctctcgaaaggctggtgactaggtgtccctctctcaagtctctcaagcttaaccga
gctgttcctctcgaaaaactggctattttacttcaaagagcgcctcagcttgaggaattt
ggtaccggtggctacactgctgatgtgcgtccagatgtgttctctgatttgtccgtggct
ctctctggctgcaagaagttgaagtgcttatctgggttttgggatgctgctcctgcttat
cttccagctgtttattccgtttgctgtcgggttactactttgaacctgagttatgcgacg
gttcagagttatgatcttgtcaagcttcttagccaatgtcctaaattgcagcgtctctgg
gtgttggattacatcgaggatactggtcttgaagtgcttgcttcaacctgcaaggacctc
cgcgagctgagagtgtttccgtctgacccttttgtcatggaggcaaacgttgcattgacg
gaacaagggcttgtctcggtctctatgggctgtccaaaactcgagtcggttctctacttc
tgccgtcaaatgaccaatgatgcgttggtaaccattgctaggaaccgtcccaacatgacc
cgcttccgtttgtgcatcattgagccgaaagcccctgaccatatgactctagagccactg
gacgtgggatttggagccatagttgagcactgcaaaaacctccggcggctctccctgtca
gggctcttgaccgacaaggttttcgaatacattgggacgtatgcaaagaagatggagatg
ctgtcagtggcgtttgcaggagagagtgacttggggatgcatcatgtgttgtcagggtgc
gatagtttgaggaagctagagataagggactgcccgtttggagacaaggcgctattggcc
aatgcttcgaagctggagacaatgcgatctctttggatgtcttcttgctcggtgagtttt
ggagcctgcaagttattaggacagaagatgccaaagctcaatgtggaagtcatcgatgaa
aggggtccgccggactcgagaccggagagctgccctgttgagagagtgttcatataccga
acagtggcgggtcctcggtttgacatgcctggcttcgtctggaacatggaccaacaacac
tcaaccatgagggtttgccagggaaatggtcactactaa
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