KEGG   Brassica napus (rape): 106445587
Entry
106445587         CDS       T04128                                 
Name
(RefSeq) replication factor C subunit 3-like
  KO
K10756  replication factor C subunit 3/5
Organism
bna  Brassica napus (rape)
Pathway
bna03030  DNA replication
bna03410  Base excision repair
bna03420  Nucleotide excision repair
bna03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    106445587
   03410 Base excision repair
    106445587
   03420 Nucleotide excision repair
    106445587
   03430 Mismatch repair
    106445587
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bna03032]
    106445587
   03036 Chromosome and associated proteins [BR:bna03036]
    106445587
   03400 DNA repair and recombination proteins [BR:bna03400]
    106445587
DNA replication proteins [BR:bna03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    106445587
  DNA Replication Termination Factors
   ELG1-RFC complex
    106445587
Chromosome and associated proteins [BR:bna03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    106445587
DNA repair and recombination proteins [BR:bna03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     106445587
  Check point factors
   HRAD17(Rad24)-RFC complex
    106445587
SSDB
Motif
Pfam: RFC_C DNA_pol3_delta2 RCF1-5-like_lid AAA Rad17 Sigma54_activ_2 AAA_22 DUF815 AAA_5 RsgA_GTPase RuvB_N Mg_chelatase ABC_tran AAA_29 AAA_23 AAA_16 AAA_24 AAA_2 T2SSE ATPase_2 nSTAND3 TsaE nSTAND1 FtsK_SpoIIIE
Other DBs
NCBI-GeneID: 106445587
NCBI-ProteinID: XP_048601944
LinkDB
Position
A2:27151063..27154359
AA seq 354 aa
MLWVDKYRPRSLDKVIVHEEIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLKQIYG
ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN
RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR
CLNVRINAPSHDEIVKVLEFVAKKETLQLPHGFAARIAEKSNRSLRRAILSLETCRVQNY
PFTDNQVISPMDWEEYVAEISTDMLREQSPKSLFQVRGKVYELLVNCIPPEVILKKLLHE
LLKKLDSELKLEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKNFLISTFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgttgtgggtcgacaagtacaggccgagatcgctagataaggtcatcgtccatgaggag
atcgcccaaaatctcaagaaattggtaacggagcaagattgtccgcatctgctgttctat
ggaccgtctggttcgggtaagaaaaccctaatcatggcgcttctcaagcagatatatggt
gccagcgctgagaaggtgaaagtggagaacagggcttggaaagtcgatgctgggagtaga
actattgatctggagctcactacgttatcaagcacaaatcatgtggagcttactccaagt
gatgcaggctttcaggacagatacatcgttcaagagatcattaaagagatggccaagaac
agacctattgacaccaagggaaagaagggatataaggtgttggtactaaatgaagttgac
aagctctcacgagaagctcagcattctctgcggagaacaatggagaaatatagctcatca
tgccgtctcatcttatgctgtaacagttcttcgaaggttacagaagccattaagtctcgt
tgtctcaatgtgaggataaatgcaccttcgcacgatgagatagtgaaagtgttggagttc
gttgcaaagaaagaaactctgcagctaccacacggttttgctgctcgtattgccgaaaaa
tcgaaccgcagtcttagaagagctattctgtcgcttgagacctgtcgtgtccaaaactat
ccgttcacagataaccaagtgatatcacccatggattgggaagagtatgttgctgaaata
tcaactgacatgttgagggaacagagccctaaaagtttgtttcaggtgcgtgggaaggtg
tacgagctgctagttaactgcattccaccagaagtcatactgaagaaacttcttcatgaa
ctgctgaagaaacttgactcagagctgaagcttgaagtctgccactgggctgcatattat
gaacatcggatgagactaggtcagaaagccatatttcacatagaagcatttgtggccaaa
ttcatgagcatatacaaaaacttcctcatttcaacatttgggtag

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