Brassica napus (rape): 106445623
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Entry
106445623 CDS
T04128
Name
(RefSeq) pentatricopeptide repeat-containing protein At2g15820, chloroplastic
KO
K27936
pentatricopeptide repeat-containing protein, chloroplastic
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106445623
Spliceosome [BR:
bna03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
106445623
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Gene cluster
GFIT
Motif
Pfam:
LAGLIDADG_2
PPR_2
PPR
PPR_3
PPR_long
PPR_1
RPN7
AEP1
HAT_Syf1_CNRKL1_N
Motif
Other DBs
NCBI-GeneID:
106445623
NCBI-ProteinID:
XP_013742666
UniProt:
A0A078IXF9
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Position
C7:10066819..10069510
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AA seq
793 aa
AA seq
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MIANRACDFSPPLSTASPSGAFATVTVTIPNFYFFSPSLNPNIIPHLPIIRHRSSSSRRL
LRRLSFSRNETQSFPQPFTANSASHRTRTFVEHVAGTKESPNQTIEVYDFGDLESARNDL
RNVATRRVETDVEVREIEDLPEEWRRSKLAWLCKEVPSHKAVTLVRLLNAQKKWVRQEDA
TYICVHCTRIRENETGFRVYRWMTQQNWYRFDFGLATKLADFLGKERKFTKCREVFDDIM
NQGRVPSESTFHILVVAYLSSSEEGCFQEACSVYNRMIQLGGYRPRLSLHNSLFRALVSK
QGGPSSDDVRQAEFIFHNVVTTGLEVQKDIYSGLIWLHSCQDEVDIERINYLREEMRKAG
FEESNEVVVSLLRAYAKEGEVEEVERTWLELLGLDCGIPSQAFVYKMEAYAKVGDFARAL
KIFREMDKHLGGATVSGYHKIIEVVCKINQVELAESLLEEFLETGKKQLLPSYIEIVEMY
FDLGLHEKLEKAFVDCLEKCQPNQTIYNIYLESLVNIGNLEKAGDVFDEMKNNGTINVNA
SSCNTVLKGYLDSGNHAKAKKIYELMSLKKYEVESPLMEKLDYILSLVRKEVKKPLSMKL
SKEQREVLLGLLLGGLRVESDKERKSHKIMFEFRGKSQAHLILRQHIHDQFREWLPHSED
EDIPLEFSSISHSCFGFYADNFWPNGRPEIPKLIHRWLSPQSLAYWYMYSGYRTASGDVI
LRLKGSVEGIEKVVKALRAKSMECRVKKKGNVFWIGLQGTNSGLFWKLIEPHVLEDMKDH
LRPAYEAVDHDRD
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgatagctaatagagcttgcgacttctctcccccgctctccaccgcctctccttccgga
gccttcgccaccgtcaccgtcaccatcccgaacttctacttcttctctccctccctaaac
cccaacatcatcccccatctcccaatcatccgccaccgcagcagctcctcgcgtcgctta
ctccgccgtctctccttcagtcgaaacgaaactcagtcctttccacagccattcactgct
aattccgcttctcaccgtaccagaactttcgtcgaacacgttgcaggcactaaagaatca
ccaaaccaaaccatcgaagtctacgatttcggagatttagagtctgctaggaacgatttg
aggaacgttgcgactcgtagagtcgagactgatgtggaagtgagagagatagaagacttg
ccggaagagtggcgccgctccaagctagcctggctgtgtaaagaagttccgtcgcataaa
gccgtgacgcttgtgaggctcttgaatgctcagaagaaatgggttcgtcaagaagacgct
acttacatctgtgtccattgcacacggattcgcgagaacgaaacaggattcagagtgtat
agatggatgacgcagcagaattggtaccggtttgatttcggtttagccacaaagctagct
gatttcttagggaaagagaggaagttcacgaaatgtcgagaggtgttcgatgatattatg
aatcaaggacgtgttccaagcgaatccacgtttcacattcttgtagttgcttatctaagt
agctcagaggaaggttgtttccaagaagcgtgtagtgtttacaatagaatgattcaactt
ggaggttacagaccgcgtcttagtctgcataactctttgtttagagctttggttagcaaa
cagggagggccttcgagtgatgacgttaggcaagctgagtttatcttccataacgttgtg
acgaccgggcttgaggtgcagaaagatatctatagcgggctaatctggctgcatagttgt
caagacgaagttgacatagagaggataaactatctaagagaagagatgaggaaggccggt
tttgaggagagtaacgaagttgtggtttcgttactcagagcgtatgctaaggaaggagaa
gtggaagaagttgagaggacatggcttgaattgcttggtttggattgcggtataccttct
caagcgtttgtgtacaaaatggaagcttacgcaaaagtaggcgatttcgcgagagctttg
aagatatttagggaaatggataagcatttaggtggtgcaacagtttctggataccacaag
atcattgaagtcgtatgtaaaataaatcaagtggaacttgcggaatctctcttggaagag
tttttagaaaccgggaagaagcagcttctaccttcatatatagagatagtcgaaatgtac
tttgatttgggtttacatgagaaactggagaaggcttttgttgactgcttggagaaatgt
caacctaaccagactatatataacatatacttggagtcattggttaatataggcaacctt
gagaaagcaggggacgttttcgatgaaatgaagaacaacgggacaatcaatgtgaatgct
agttcctgcaacaccgttttgaaaggatacttggattctggaaatcatgcgaaggcaaag
aagatatatgagctgatgagtttgaagaagtacgaagtcgagtcaccgcttatggaaaag
cttgattacatccttagcttggtgagaaaagaagtgaagaaaccgttgagcatgaagcta
agtaaagaacagcgagaggtattgttgggtttgctgttaggtggtttgcgagtggaatca
gacaaagagaggaagagtcacaagatcatgtttgaattcagagggaagtctcaagctcat
ctgatactgagacaacacatacatgatcagttccgtgagtggttgcctcattccgaagac
gaggatataccattagaattctcctccatttctcattcatgctttgggttttacgctgat
aacttctggccaaatggtcgacctgagattcccaaactgattcaccggtggctctcgcct
cagtcactggcttattggtatatgtacagtggatatagaacagcctcgggagatgttatc
ttgaggttgaagggaagtgtagaaggtatcgagaaggttgtgaaggctctgagagctaaa
tctatggaatgtagggttaagaagaaaggaaacgttttctggattggacttcagggaaca
aactcgggtttgttctggaagctaatagagcctcacgtcttagaggacatgaaagatcat
ctaagacccgcttatgaagcagtggaccatgatagggactaa
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