Brassica napus (rape): 106445845
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Entry
106445845 CDS
T04128
Name
(RefSeq) putative pectate lyase 14
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106445845
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106445845
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
106445845
NCBI-ProteinID:
XP_013742939
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Position
A4:complement(6161404..6167329)
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AA seq
434 aa
AA seq
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MVIARTLSSVSATLIIILTLLVHVNGVQDTKELKPDQSSRNTSMTDYEWHEHAVKDPEEI
AAMVDMKIRNSTERRRLGYFSCSTGNPIDDCWRCDKKWHRQRKRLASCAIGFGRNAVGGR
DGRFYVVTDPSDHDPVKPKPGTLRYAVIQDRPLWIVFKRDMVITLSQELIMNSFKTIDGR
GVNVHIAGGACITIQYVTNIIIHGVNIHDCKRTGNAMVRSSETHYGWRTMADGDGISIFG
SSHIWIDHNSMSNCADGLIDAIMGSTAITISNNYLTHHNEAILLGHTDSYTRDKMMQVTI
AYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPGNRFAK
EVTKRVGAGKGEWNQWNWRSQGDLLLNGAYFTSSGAGASSSYARASSLAAKSSSLVGMLT
YSSGALKCRIGTPC
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggtgatagcaagaacattgtcttcagtctcagcaactttgatcataattctaacactc
cttgtccatgtaaatggagttcaagatacaaaggagttaaaacctgatcagagctcaaga
aatacatcaatgactgattatgaatggcatgaacacgccgtaaaagacccagaagaaata
gcagccatggtcgatatgaagatacgaaacagtacagaacgtaggaggttaggctacttc
tcctgctcaaccggaaacccaatcgacgattgttggcgttgcgataaaaaatggcatcgc
cagagaaagcgtctagcgagttgcgccataggattcggacgtaacgccgtcggaggccga
gacggacgtttctacgtcgtcacggacccatcggatcatgatccggttaaacctaaaccc
ggtacgctccggtacgcagtgatacaagaccgaccgctatggatcgtcttcaagcgcgac
atggtcatcactctaagccaagagctcatcatgaatagcttcaaaacgatcgatggtcgg
ggcgtgaacgtgcacatcgctggtggagcatgcattacgattcagtacgtgacgaacatc
atcattcacggggttaacattcacgactgtaagcgtactggtaacgccatggttagaagc
tcggagacgcattatggttggagaacgatggctgatggcgatgggatctcgatttttggg
tcgagccatatttggatcgatcataattccatgtccaactgtgctgatggattgatcgat
gcgattatgggatctactgctattaccatttcgaataactatctcactcaccacaacgag
gctattttgttggggcataccgattcctacaccagagacaaaatgatgcaagtgaccatt
gcatataatcattttggggagggtcttatacaaagaatgccaaggtgcaggcatggatat
ttccatgtggtaaacaatgattacactcactgggaaatgtatgcaatcggtggaagtgca
aaccctacaatcaacagtcaaggaaatcgattcctagccccaggaaatcgttttgctaag
gaggtgacaaagagggtaggtgcagggaaaggagaatggaaccagtggaactggagatca
caaggagacttattgctcaatggtgcttacttcacttcatctggagctggagcttcttca
agctacgctagagcctctagtttggctgctaaatcatcttcccttgtaggtatgcttacc
tatagctctggtgccctgaaatgcaggatcggtacgccttgttaa
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