Brassica napus (rape): 106446509
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Entry
106446509 CDS
T04128
Name
(RefSeq) paired amphipathic helix protein Sin3-like 4 isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bna03036
]
106446509
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
106446509
REST complex
106446509
Heterochromatin formation proteins
Other heterochromatin formation proteins
106446509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAH
Sin3a_C
Sin3_corepress
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
106446509
NCBI-ProteinID:
XP_013743715
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All DBs
Position
C6:complement(36429186..36435483)
Genome browser
AA seq
1293 aa
AA seq
DB search
MVGGGGSAQKLTTNDALAYLKAVKDKFADKREKYDEFLEVMKDFKAQRVDTSGVILRVKE
LFKGNRELILGFNTFLPKGFEITLLPEEDDQPLPKKPVEFEEAISFVNKIKTRFQGDDRV
YKSFLDILNMYRKENKSITEVYQEVAILFRDHHDLLVEFTHFLPDTSGTTSTNDLVKMSV
RDRGGFKSLPTMRDSDKKDPINASHANRDFKTEHMELDQERSLLKESKEDVRRIDKKNDY
MDDQKGHLLHSKKKLTLRDEDSTETSNQGREGDKFCGAIATSSTKDDKGHVQELAFVDRV
KAKLNTSEYQEFLRCLNLFSKEIISQPELQSLVGNLIGGYPELMEAFRVFLVQCEKNDGL
LSSIVTKKSLWSDGKFPQPTKSQDKDTDREREKTERLRERDREKERLEKAAASQKWAKPI
SELDLSNCEQCTPSYRLLPKNYPIPIASQKMEIGSQVLNDHWVSVTSGSEDYSFKHMRKN
QYEESLFRCEDDRFELDMLLESVNSATNRVEELLAKINNNELKTDTPICVENHLTALNIR
CIERLYGDHGLDVIDLLKKNAYLALPVILTRLKQKQEEWGRCRSEFNKVWADIYTKNYHR
SLDHRSFYFKQQDSKNLSAKALLAEIKEISEKKRVEDDALLALAGGNRRTICSNMSFDYP
DPDLHEDLYQLIKYSCGEMCSTEQLDKVMKVWTEFLEPMFGVPSRPQVAEDREDTVNSTT
NQNIKSGDASEGSPQNGATVASTVRSNGPGKADRDVTGSKSSDDNIQNDKISKNQTTPEE
RPETKEAVTIERVHSSNSPPVDGLIPQRNGKTSVLSIVGLSNSTPKPGGLASRTEMESKP
NHVNGTLAETSNNQRSNEVSAGETKVEREEGELSPTGDFEEDNFAENDLDALSNGKNENN
LNKRSSGENDANANDEGDESAPRSSEGSGNTSHNGDVSGTESGDGEDCYPEDDNKAESEG
EAEAEVGMSDAEGDRPVLPVYARSLLHVKPLSKYVPPAILDKDNKDDSQKKNSIVFYGND
SYYVLFRLHQILYDRILSAKINSSCPERMWKTSNSTNPADSYARFMNALYNLLDGTSDNS
KFEDDCRAIIGTQSYVLFTLDKLIYKLIKHLQVVAADEMDSKLQQLYSYEKSRKPEKYLD
DVYYENARVLLPDEEVYRIECEISAPTTLSIQLLDYGHDKPDVTSISMDPTFAAYLQNQF
LSSQAKVKENPRIYLNRNKRKNGGDDELCTTDGVKIINGLECKITCSSSKVSYVFDTEDV
LHRVKRTKVLNQSSDSLIRERRIQRYQKLLTSQ
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atggttggaggaggaggaagtgcgcagaagctgactacaaatgatgcacttgcgtatctc
aaagctgtcaaggataagtttgcagataaacgcgaaaagtatgatgagtttcttgaggtc
atgaaagattttaaagctcagagagttgatactagcggtgtcatcttgagggtgaaagag
ctattcaaagggaaccgagagctgatcctgggtttcaatactttcttaccaaagggtttt
gagataactctcttacctgaagaagatgaccaacctctcccaaagaagcctgttgagttt
gaggaagctattagctttgtcaacaagattaagacaaggtttcaaggtgatgaccgtgta
tacaaatcgtttttagacattctgaacatgtatagaaaggagaacaagtccattactgag
gtctaccaggaggtggctatccttttccgggaccatcatgatttgcttgtggagttcact
cactttctcccagatacttcagggactacctctactaatgatcttgtgaaaatgtctgta
cgtgaccgaggaggctttaaatctcttcccaccatgcgagactctgacaagaaggacccg
atcaatgcgtcacatgctaaccgtgacttcaaaactgaacatatggagctagaccaggag
agatctttgttgaaagaaagtaaagaagacgttagacgcattgacaaaaagaatgattac
atggatgaccagaaagggcatttgctccacagtaagaagaagctgacactaagggatgaa
gattctactgaaacctcgaatcagggtagagaaggagacaagttttgtggagccattgcc
acttcatctactaaagatgataaaggccatgtccaagaacttgcttttgttgatagagtg
aaggcaaagcttaatacctctgagtaccaagagttcttacgatgtcttaatctcttttca
aaggaaataatcagccaaccagagttgcagtctttggtgggtaatttaattggaggatat
ccagaactcatggaagcctttagagtctttttggttcagtgtgaaaagaatgatggacta
ctctctagtattgtgactaagaaatccttgtggagtgatggaaaatttcctcagcctact
aagtcacaggacaaagatacagaccgagaacgtgagaagactgaaaggcttagagaaaga
gaccgtgagaaggagaggcttgaaaaggcggcagcgagccagaaatgggctaaacctatc
agcgaactagatctctccaactgtgaacaatgcactcctagttaccggttacttccaaag
aattatccaattcctattgcaagccagaaaatggagattggtagccaggtgcttaatgat
cattgggtctctgtcacttcaggaagtgaagattattcattcaaacacatgcgtaagaac
cagtacgaagagagcctcttccgctgtgaagatgacaggttcgagctagacatgctatta
gagtctgtgaactcagctaccaaccgagtggaagagttattggcaaagattaacaataat
gaattgaaaaccgatactcccatctgtgtagagaatcacctcacagctctaaacataagg
tgcatagaacgtttatacggtgaccacgggctggatgtgattgatttgttaaagaagaat
gcatatcttgctttacctgtaatactgacacgtttgaaacagaagcaagaagaatgggga
aggtgtcgttctgagtttaacaaagtatgggctgatatatacaccaagaactaccacaga
tcacttgaccatcgcagtttctatttcaaacagcaggattcaaagaatctgagcgcaaaa
gctttgttggcagagataaaagagatctctgagaagaagcgagtagaggatgatgcactt
cttgctcttgctggtggaaacaggcgaactatttgctccaacatgagttttgattatccg
gatcctgatctacacgaggatctttatcagctgatcaagtattcttgtggagaaatgtgt
tcaacagaacagctagataaagtaatgaaggtgtggacagagtttttggaaccgatgttt
ggtgttccttctcgccctcaagttgctgaagaccgagaagataccgtcaattctactacg
aaccagaatataaaaagtggcgatgcaagcgagggcagtcctcaaaatggagctactgtt
gccagcactgtgcggtcaaatggccctggaaaagccgatagagatgtcaccggcagtaag
tcttcagatgacaacattcagaatgataaaatttcgaaaaatcaaaccacacctgaagaa
aggcctgaaaccaaagaagctgttactattgaacgtgtgcatagctcaaattcaccacct
gtagatggattgatacctcaaaggaatgggaaaaccagcgtcttatccattgttgggctt
agcaatagtactccaaaacctggtggtttagccagtagaacggagatggagtcgaagcca
aaccacgtaaatggtacattggctgaaacatcgaataatcaaagatctaacgaagtctct
gctggggaaaccaaagttgaaagagaggaaggtgagctttctccaacgggagattttgag
gaagataactttgcagagaatgacttggatgctctcagcaatggtaagaatgaaaataac
ttaaacaagagaagtagtggagagaatgatgctaatgcgaatgatgaaggtgatgaaagt
gcaccaagatcatcagaaggcagcggaaacacatctcataacggtgatgtttcgggaact
gagtctggtgatggtgaagattgttaccctgaagatgataacaaggcagaaagtgaaggt
gaggctgaagctgaagtaggtatgtctgatgctgaaggagataggcctgtgttgcccgtt
tatgcgcgaagcctgctgcatgtgaagcctctgtctaagtatgtccctccagctatactc
gataaggacaacaaagatgattctcagaagaagaactcaatagtcttttatgggaatgac
tcttattacgttcttttcaggcttcatcagattttgtatgacagaatactatcagcaaag
atcaattcatcgtgtcctgaaagaatgtggaagacctcaaattcaacaaaccctgcagat
tcctacgccagattcatgaatgctctctacaacttgcttgatggcacgtctgataactcc
aagtttgaagatgactgccgagcaatcattgggacacagtcatatgttctcttcacatta
gacaaactgatctacaagctcatcaagcatctccaagtagtagcagctgatgagatggac
agcaaactacaacagctgtattcatatgagaaatcaagaaagcctgagaagtacctcgat
gatgtttattatgaaaacgctcgtgttcttcttcctgatgaagaagtataccgcattgaa
tgtgagatttcagcaccaacaacattatctattcagcttctggactatggacatgataag
cctgatgtgacttccatatccatggacccaacttttgcagcttacctccagaatcaattc
ctttccagccaagctaaggtgaaagagaatcctcgaatctatctaaaccggaataaacgt
aaaaacggtggtgacgatgagctctgcaccacggatggagttaagattataaacggtttg
gagtgtaagataacatgcagttcttcaaaggtctcgtatgtatttgacacagaggatgta
ttgcatcgtgttaagaggacgaaggttttgaaccaaagcagcgattctttaattagggaa
aggaggatacaaagataccaaaaacttctcaccagccaatga
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