KEGG   Brassica napus (rape): 106447122
Entry
106447122         CDS       T04128                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
bna  Brassica napus (rape)
Pathway
bna03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106447122
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:bna03041]
    106447122
Spliceosome [BR:bna03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    106447122
 Complex C
   U5 SnRNP specific factors
    106447122
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 EIF3I Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_EIPR1 Beta-prop_SCAP NBCH_WD40 Beta-prop_SPT8 Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_IFT122_1st WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_HPS5 Beta-prop_Nup120_160 Beta-prop_RIG_1st Beta-prop_NWD2_C Nbas_N WD40_like KNTC1_N RMC1_N
Other DBs
NCBI-GeneID: 106447122
NCBI-ProteinID: XP_048609318
LinkDB
Position
C4:complement(3828547..3829688)
AA seq 334 aa
MEIMPRENENALSAPSPMELGPGPYGKQRTSSLEAPIMLLTGHPSAVYTMKFNPSGTLIA
SGSHDREIFLWRVHGDCKNFMVLKGHKNAILDLHWTSDGSMIVSASPDKTVRAWDVETGK
QVKKMAEHSSFVNSCCPTRRGLPLIISGSDDGTAKLWDLRQRGAIQTFPDKYQITAVSFS
DAADKIFTGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLTNGMDNKLCVW
DMRPYAPQNRCVKVFEGHQHNFEKNLLKCSWSPDGTKVTAGSADRMVHIWDTTTRRILYK
LPGHKGSVNECVFHPTEPIIGSCSSDKDIYLGEI
NT seq 1005 nt   +upstreamnt  +downstreamnt
atggagatcatgccaagagagaatgagaacgctttgtcagctcctagtcccatggagttg
ggacctggtccctatgggaagcagcgtacatcgagcctcgaagcaccaatcatgctgcta
actggtcacccgagtgctgtctacaccatgaagttcaacccatccgggactctaatcgcg
tctggatcacacgacagggagattttcctctggagagtccacggggactgcaaaaacttc
atggttctgaaaggccacaagaacgctatccttgaccttcactggacaagcgacggctcc
atgattgtgtcagcgagtccggataaaaccgtgagggcgtgggacgttgaaactgggaaa
caagtcaagaagatggctgagcattcgtcctttgtgaactcctgctgtcctacgcgcaga
ggattacctttgatcatcagcggatcggatgatggaactgcaaagctttgggatctgcgt
cagagaggagctatacagacgtttccagataagtaccaaatcacagcggtgagcttctct
gatgcagctgataagatcttcactggaggtgttgacaatgacgttaaagtctgggacctg
cggaaaggggaagccaccatgacgctcgagggacatcaagataccatcacggggatgagt
ttgagtccagacggttcctaccttctcaccaatgggatggacaacaagctctgcgtgtgg
gacatgcgtccttacgctccgcagaatcggtgtgtgaaggtctttgaagggcatcagcac
aactttgagaagaacttgctgaagtgttcttggtcgcctgatggtactaaagtcactgct
ggtagcgcggaccgtatggttcatatatgggacacaaccactcggaggattctgtacaag
ctcccggggcataaaggctcggttaatgagtgtgttttccacccaaccgagcctatcatt
ggttcttgcagtagcgataaagatatctacttgggagagatctga

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