Brassica napus (rape): 106447503
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Entry
106447503 CDS
T04128
Name
(RefSeq) RRP12-like protein
KO
K14794
ribosomal RNA-processing protein 12
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bna03009
]
106447503
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
90S particles
Other 90S particles
106447503
Pre-60S particles
Other pre-60S particles
106447503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP12_HEAT
HEAT_RRP12_N
GIT1_C
MMS19_N
TAF1_subA
Ltn1_1st
Motif
Other DBs
NCBI-GeneID:
106447503
NCBI-ProteinID:
XP_013744892
LinkDB
All DBs
Position
A5:complement(5680827..5687360)
Genome browser
AA seq
1265 aa
AA seq
DB search
MDSLCLGIETGLCLTPSEPDLPVSGDFGEFMLSRLSQSKRPDLNHLCAVIDELSKALAEG
NHSRTPVAYFAATCSSLDSLLSSDAEPPLDVVQPHVVILSLVFPKVSAGVLKRNGLALRL
VLSVLRLRSVTPECLISALKCLVHLLTMGNEVSEAHSVLLNLATHSDGKVRKLANSCLRD
VLEKTRGTKACQSVSGTIAESFQKHLDLAHNSEARSAEGAQQVLYLLSTLKECVALMSKK
HVATVIEGFKMLMVTRDAFVARPVIDSLNALCLNPTSEVPVEALVEVLYHAAVLFSAPET
SADAMTSTARLFKVGMVRAFSLNRDVCVVKLPGVFNGLKDIIASEHEEAIFAATDALKSL
ICSCIDESLIREGVNGIRNSNLDVKKSSPTVIEKLCATVESLLDYKYHAVWDMAFQVVST
MFNKLGEESSYFMRKTLEDLSDMQDLPDEGFPYRKQLHECVGSALGAMGPETFLNIVRLN
LEASDLSEINVWLFPILKQYTVGGRLSFFTETIFRMIETMSHKAQQLKLQGLTAASRSVD
SLVYSLWALLPSFCNYPVDTAESFEDLGRILCGALQTQAETRGVICTSLNILIQQNKDVV
EGKEVPVNDAASPALVRAITRYDSHHAAANLEVMRSCAPKLLDVLSKIFHESGKDDGGSL
QSAIGNLASIAEKKTVSKLLFKTLRELLMATKTAIAEDESSVSGMDVDHTSDKNSSSNLR
ARLFDLLVSLLPGLDGQAVDTVFSSLKPAMQDPKGQIQKKAYKVLSVILKSSDGFVSKNL
EELLELMHNICHVSAKRHKLDCLYFLLAYASKTDDLKARKDIVSSFLPEVILALKEVNKK
TRSRAYDVLVQIGHAYADEENGGDTEKLHGYFNMVVGCLAGEKPQMISAAVKGVARLTYE
FSELIASAYNLLPSTFLLLQRKNKEITKANLGLLKVLVAKSPVEGLHANLKSIVEGLLKW
PEGTKNLFKAKVRLLLEMLIKKCGTEAVKSVMPEEHMKLLTNIRKVKERKERKYAAGSEM
SRSQHSKETLSKASRWNDTKIFSDFADEDEDSDGDYMDGESNGRSKAPSVLKYKASKKHP
RQSHLEVDESDDEPLDLMDRYKTRSALRSSELGRKRKADSDEEAEFDAEGRLIIYEGERA
KRKEISDAGSDAKSRFSANSSKKNQKRLKTSESGYAYTGKEYASKKASGDLKRKDKLEPY
AYWPLDRKMMSRRPDQRAVAVRGMSSVVKLTKRLEGKSAAEALATTKFQKFRSGQKKPAG
KKKSK
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atggattcattatgtctcggcattgaaaccggcttgtgcctcacaccttcagaaccagac
ctccctgtttccggtgattttggggagttcatgctctctcgcttatcccaatccaaacga
ccagaccttaaccacctctgcgctgtgatcgacgagctatcaaaagctctagcggaaggt
aaccatagccggacgcctgtggcttacttcgccgccacgtgcagctcgctggacagcctc
ttgtcttcagacgctgaaccacctttggatgtggtccagccacatgttgtcatcctttca
cttgtgttccctaaagtctcagctggagtattgaagaggaatggtttggctttgcgtctc
gtcctcagcgttctgcgtctaagatcagttacacctgagtgcttgatctcggcattgaag
tgtttagttcatctcctcacgatggggaacgaagtctctgaagctcacagcgtcttgctg
aatcttgcaactcattcagatggaaaggtaagaaagctagcaaactcgtgtctccgtgat
gtcctggagaaaactcgtggtacaaaggcatgtcaatcagtgagtggaaccatcgcagaa
tcgttccagaaacatttagatctcgctcataactcagaagctcgctctgccgaaggagca
cagcaagtgctttaccttctcagcactctaaaagaatgcgtggccctgatgtctaagaaa
catgtagctactgtgattgagggatttaagatgctgatggttacgcgagatgcattcgtt
gcaaggccagtgatagactctttaaacgcgctttgtctcaatccaacatctgaggttcca
gttgaggcgcttgtggaagtgttgtatcacgctgctgtactgttctcggcgccggaaaca
tctgctgatgccatgacctccacagcacgtttgtttaaagttgggatggtgagggctttt
tctctaaacagagatgtttgcgtggttaagcttcctggtgtgttcaatggtctgaaagat
attattgcatctgaacatgaggaggcgatctttgcagcaacagatgcattgaagagtttg
atatgttcatgcattgatgaaagcttgatcagagaaggcgtcaatggaatccggaattca
aacttggatgtaaagaagtctagtccaacagtcattgagaaactttgtgcaacggttgaa
agcttgcttgattacaagtaccatgcggtctgggacatggcttttcaagttgtttcgacc
atgttcaataaattaggggaagaatcttcatattttatgaggaagacccttgaggactta
tcagatatgcaagatttacctgatgaaggatttccttataggaagcagttgcatgagtgt
gtaggatcagcccttggtgctatgggacctgaaacatttttaaacattgtgcgtttaaac
cttgaggcgagtgatctgtctgagataaacgtttggctcttcccaatcctgaagcaatac
acagttggaggacggctaagtttcttcacagagactatttttagaatgatagaaacaatg
agccataaagctcaacagcttaagctccaaggtcttactgcagcatctaggagtgtggat
tctcttgtatactcattatgggctctgttaccttcattttgtaattatcctgtggatacc
gcggagagctttgaggatctggggcgaatattgtgtggagctcttcaaacgcaggctgaa
acccgtggagttatatgcaccagtttgaatattctgattcagcaaaataaggatgttgtg
gagggtaaggaagtacctgtcaatgatgcagcaagtcctgcgttggttcgagctattact
cgttatgattcacaccatgcggcagctaatttggaagttatgcggtcgtgtgctcctaag
ttattggatgtgttgtcaaagatatttcatgaatctggcaaagatgatggcggttctctt
cagtctgcgatagggaatttggcttccatagcggagaaaaagactgtttcaaagctactt
ttcaagacgctgcgagagcttttaatggctacgaaaactgccattgccgaagatgaaagc
tctgttagtgggatggacgtggatcatacatcagacaaaaattcttcttccaaccttagg
gcaaggttgtttgatctgttagtttctcttttgcctggtttggatggtcaagcagtagat
accgtattcagttccttgaagcctgcaatgcaggatcccaagggccaaattcaaaagaag
gcgtacaaagttctttccgttatcttaaagagttctgatggatttgtttcaaagaacctc
gaggagttgcttgagctgatgcacaatatatgccatgtctctgctaagcgccataaactt
gattgcttatacttcctgttagcttatgcgtcaaagacggatgatttaaaggcgagaaag
gacattgtttcttcatttctacccgaagttatacttgccttaaaggaggtaaataagaaa
acaagaagcagagcctatgacgtgcttgttcagattggacatgcatacgcagatgaggaa
aatggtggagacactgagaaattacatggttacttcaatatggtggttggttgtttggct
ggagaaaaacctcagatgattagtgctgctgttaagggagtagctcgtttgacctatgag
ttttccgaactcatagctagtgcttacaatttgcttccttcaacatttcttctcctccag
aggaaaaataaggaaatcacaaaagcaaatttaggtttgttaaaggtgttggtggctaaa
tcacccgttgaaggactacacgcaaacttaaagagcattgttgaaggcttacttaagtgg
ccagaaggaaccaaaaacctttttaaagcaaaggtgaggctattgttggagatgctaatc
aagaaatgtggtactgaggctgtcaagtctgtgatgcctgaggaacatatgaaactcctt
acaaacatccgaaaggtcaaggaacgtaaagagaggaaatatgcagctggctctgagatg
agtagatctcagcattcaaaagaaactctatcaaaggccagccgttggaatgatacaaag
atattttctgattttgcggatgaagacgaggacagcgacggagactacatggatggggaa
tcgaatggccgtagtaaggctccctctgtgttgaaatataaagcatccaagaaacatccg
aggcagagtcatcttgaagttgatgagtcagatgatgaaccgcttgacttaatggaccga
tacaaaacaagatcagctcttcgatcaagtgagcttggcagaaaacggaaagctgactcg
gatgaagaagcagagtttgatgcggaaggacggctaatcatctacgaaggagagagagcc
aaaagaaaagaaatctctgatgcaggttcggatgccaagagcaggttctctgcaaactcg
tcgaagaagaaccagaagaggctaaagacatcagagtctggatacgcttacacagggaaa
gagtatgcaagcaaaaaggcaagtggggatcttaaaaggaaagataagcttgaaccttat
gcatattggccacttgaccgcaagatgatgagccgtagaccagatcagagggcggttgca
gtcagaggtatgtctagtgtggttaagctgacgaagaggttggaaggtaagagcgctgcg
gaagcacttgccactactaagttccaaaagttcaggagtggtcagaagaaaccggctggg
aagaagaaaagcaagtaa
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